Variant report

Variant	rs16936586
Chromosome Location	chr8:49286914-49286915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10094661	1.00[CHB][hapmap]
rs10107550	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10109005	0.84[ASN][1000 genomes]
rs10109710	0.84[ASN][1000 genomes]
rs11779066	0.86[EUR][1000 genomes]
rs11784649	0.84[ASN][1000 genomes]
rs12334641	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28669917	0.84[ASN][1000 genomes]
rs28696798	0.84[ASN][1000 genomes]
rs4873278	0.82[EUR][1000 genomes]
rs4873279	0.82[EUR][1000 genomes]
rs6992483	0.84[ASN][1000 genomes]
rs7003636	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49282800-49287000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr8:49283400-49288600	Weak transcription	NH-A	brain
3	chr8:49284200-49291000	Weak transcription	Fetal Intestine Small	intestine
4	chr8:49284200-49291400	Weak transcription	Fetal Kidney	kidney
5	chr8:49284400-49289200	Weak transcription	Fetal Stomach	stomach
6	chr8:49284800-49288000	Weak transcription	NHLF	lung
7	chr8:49284800-49288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:49284800-49289000	Weak transcription	HSMM	muscle
9	chr8:49285000-49289800	Weak transcription	Fetal Lung	lung
10	chr8:49285600-49287000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:49285600-49287200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:49285600-49290000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:49285600-49292400	Enhancers	NHDF-Ad	bronchial
14	chr8:49285800-49288000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:49286400-49288000	Weak transcription	Gastric	stomach
16	chr8:49286400-49288800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:49286400-49289200	Weak transcription	HSMMtube	muscle
18	chr8:49286400-49289600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:49286600-49287600	Weak transcription	Stomach Mucosa	stomach
20	chr8:49286600-49288000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:49286600-49288000	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:49286600-49288000	Weak transcription	Osteobl	bone
23	chr8:49286600-49288200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:49286600-49288600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:49286600-49292400	Weak transcription	Spleen	Spleen
26	chr8:49286800-49288000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:49286800-49288000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:49286800-49288600	Weak transcription	Placenta	Placenta

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