Variant report

Variant	rs28669917
Chromosome Location	chr8:49320979-49320980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49319715..49321423-chr8:49532860..49535801,2	MCF-7	breast:
2	chr8:49319707..49321883-chr8:49548492..49551436,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253702	Chromatin interaction
ENSG00000253455	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10094661	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10097514	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10107550	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10109005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109710	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984473	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11991365	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13439723	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16936586	0.84[ASN][1000 genomes]
rs28696798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992483	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298006	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49315400-49322200	Weak transcription	Ovary	ovary
2	chr8:49318600-49321400	Enhancers	NHDF-Ad	bronchial
3	chr8:49318600-49321800	Enhancers	Fetal Muscle Trunk	muscle
4	chr8:49318600-49322000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:49318600-49322400	Enhancers	Fetal Muscle Leg	muscle
6	chr8:49318600-49322600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:49318800-49321000	Enhancers	NHEK	skin
8	chr8:49318800-49321400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:49318800-49321800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:49318800-49322400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:49318800-49322800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:49318800-49323000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:49318800-49323000	Enhancers	NHLF	lung
14	chr8:49318800-49323200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:49319400-49321400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:49319400-49322400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:49319400-49322800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:49319400-49322800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:49319400-49323000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:49319800-49321200	Weak transcription	Fetal Lung	lung
21	chr8:49319800-49332400	Weak transcription	Fetal Kidney	kidney
22	chr8:49320000-49321000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:49320000-49321000	Flanking Active TSS	NH-A	brain
24	chr8:49320000-49322000	Enhancers	Fetal Stomach	stomach
25	chr8:49320000-49322600	Enhancers	Esophagus	oesophagus
26	chr8:49320000-49322800	Enhancers	Hela-S3	cervix
27	chr8:49320200-49321000	Enhancers	Gastric	stomach
28	chr8:49320200-49321600	Enhancers	Placenta	Placenta
29	chr8:49320200-49322400	Enhancers	Aorta	Aorta
30	chr8:49320600-49321000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr8:49320600-49321000	Flanking Active TSS	A549	lung
32	chr8:49320600-49321000	Flanking Active TSS	HMEC	breast
33	chr8:49320600-49321000	Flanking Active TSS	HSMMtube	muscle
34	chr8:49320600-49322000	Flanking Active TSS	Osteobl	bone
35	chr8:49320600-49322400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr8:49320600-49322600	Flanking Active TSS	HSMM	muscle
37	chr8:49320800-49321000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr8:49320800-49321000	Flanking Active TSS	HUVEC	blood vessel
39	chr8:49320800-49321400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr8:49320800-49321600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:49320800-49321800	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links