Variant report

Variant	rs13439723
Chromosome Location	chr8:49353428-49353429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:49349539..49351813-chr8:49352061..49354679,2	MCF-7	breast:
2	chr8:49351110..49353457-chr8:49360622..49362528,2	K562	blood:
3	chr8:49331272..49334248-chr8:49353001..49355227,2	MCF-7	breast:
4	chr8:49349665..49353206-chr8:49353264..49356600,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10093331	0.84[GIH][hapmap];0.85[TSI][hapmap]
rs10094661	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10107550	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10109005	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10109710	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10111777	0.84[GIH][hapmap];0.85[TSI][hapmap]
rs10112025	0.83[AFR][1000 genomes]
rs10113165	0.80[AFR][1000 genomes]
rs11784649	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11984473	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985893	0.83[AFR][1000 genomes]
rs11991365	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935801	0.84[GIH][hapmap];0.85[TSI][hapmap]
rs2047787	0.81[AFR][1000 genomes]
rs28516085	0.83[AFR][1000 genomes]
rs28669917	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28696798	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4554493	0.83[AFR][1000 genomes]
rs6992483	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7003636	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7006329	0.83[AFR][1000 genomes]
rs9298006	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3423089	chr8:49351999-49356297	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49343800-49354000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:49350200-49353600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49350800-49353600	Enhancers	Fetal Muscle Leg	muscle
4	chr8:49351200-49353600	Enhancers	Lung	lung
5	chr8:49351200-49354000	Enhancers	Fetal Lung	lung
6	chr8:49351400-49353600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:49351400-49353600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:49351400-49353800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:49351600-49353600	Enhancers	NHLF	lung
10	chr8:49351600-49363000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:49351800-49353600	Enhancers	Fetal Muscle Trunk	muscle
12	chr8:49351800-49354000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:49352400-49353600	Enhancers	Adipose Nuclei	Adipose
14	chr8:49352400-49353600	Enhancers	Right Atrium	heart
15	chr8:49352800-49353600	Enhancers	Pancreas	Pancrea
16	chr8:49352800-49353600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr8:49352800-49353800	Enhancers	Left Ventricle	heart
18	chr8:49353000-49353600	Enhancers	Spleen	Spleen
19	chr8:49353400-49357400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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