Variant report

Variant	rs10094661
Chromosome Location	chr8:49344967-49344968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49338684..49341580-chr8:49342826..49345610,2	MCF-7	breast:
2	chr8:49344770..49346621-chr8:49832177..49834578,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10097514	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10107550	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10109005	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10109710	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10112025	0.81[AFR][1000 genomes]
rs11784649	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11984473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985893	0.81[AFR][1000 genomes]
rs11991365	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439723	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28516085	0.81[AFR][1000 genomes]
rs28669917	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28696798	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4554493	0.81[AFR][1000 genomes]
rs6992483	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7003636	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7006329	0.81[AFR][1000 genomes]
rs7821029	1.00[CEU][hapmap]
rs9298006	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49339400-49345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49339400-49346400	Enhancers	Fetal Muscle Leg	muscle
3	chr8:49340000-49345000	Enhancers	Brain Cingulate Gyrus	brain
4	chr8:49340000-49345000	Enhancers	Placenta	Placenta
5	chr8:49340200-49345000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:49340400-49345000	Enhancers	Duodenum Mucosa	Duodenum
7	chr8:49341200-49346200	Enhancers	Right Atrium	heart
8	chr8:49341200-49346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:49341600-49345000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:49342600-49345000	Enhancers	HMEC	breast
11	chr8:49343200-49345000	Weak transcription	Esophagus	oesophagus
12	chr8:49343200-49347000	Enhancers	Fetal Muscle Trunk	muscle
13	chr8:49343400-49345000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:49343400-49345000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:49343400-49345000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr8:49343400-49345200	Enhancers	HSMM	muscle
17	chr8:49343400-49345600	Enhancers	Left Ventricle	heart
18	chr8:49343400-49346400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:49343400-49346400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:49343400-49347200	Enhancers	Lung	lung
21	chr8:49343600-49345000	Enhancers	Brain Angular Gyrus	brain
22	chr8:49343600-49345400	Enhancers	NH-A	brain
23	chr8:49343600-49346200	Enhancers	Brain Substantia Nigra	brain
24	chr8:49343800-49345000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr8:49343800-49345000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:49343800-49345600	Enhancers	Ovary	ovary
27	chr8:49343800-49345600	Enhancers	NHLF	lung
28	chr8:49343800-49346800	Enhancers	Fetal Lung	lung
29	chr8:49343800-49347200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:49343800-49354000	Weak transcription	Fetal Intestine Small	intestine
31	chr8:49344000-49345200	Enhancers	Liver	Liver
32	chr8:49344000-49345200	Enhancers	Brain Hippocampus Middle	brain
33	chr8:49344000-49345600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr8:49344000-49345600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr8:49344000-49345600	Enhancers	Spleen	Spleen
36	chr8:49344000-49345800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:49344000-49346400	Enhancers	Right Ventricle	heart
38	chr8:49344200-49345000	Enhancers	Brain Anterior Caudate	brain
39	chr8:49344200-49345000	Enhancers	HSMMtube	muscle
40	chr8:49344200-49345200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:49344200-49345400	Enhancers	Fetal Heart	heart
42	chr8:49344200-49345600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr8:49344200-49346400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:49344200-49346400	Enhancers	Psoas Muscle	Psoas
45	chr8:49344400-49345200	Enhancers	NHEK	skin
46	chr8:49344400-49345400	Enhancers	Osteobl	bone
47	chr8:49344400-49346400	Enhancers	Adipose Nuclei	Adipose
48	chr8:49344400-49347000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr8:49344400-49347200	Enhancers	NHDF-Ad	bronchial
50	chr8:49344600-49345200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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