Variant report

Variant	rs28696798
Chromosome Location	chr8:49318523-49318524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49229484..49233078-chr8:49318380..49320785,3	MCF-7	breast:
2	chr8:49317133..49318698-chr8:49321145..49323341,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10094661	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10097514	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10107550	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10109005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109710	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984473	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11991365	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13439723	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16936586	0.84[ASN][1000 genomes]
rs28669917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992483	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298006	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49309800-49320200	Weak transcription	Aorta	Aorta
2	chr8:49311000-49319400	Weak transcription	Gastric	stomach
3	chr8:49311000-49320000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:49311200-49318800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:49312600-49318800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:49312800-49318600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:49312800-49318800	Weak transcription	NH-A	brain
8	chr8:49313000-49319400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:49313000-49320200	Weak transcription	Placenta	Placenta
10	chr8:49313800-49319400	Weak transcription	Right Atrium	heart
11	chr8:49314200-49318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:49315200-49320000	Weak transcription	Fetal Stomach	stomach
13	chr8:49315400-49318600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:49315400-49318600	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:49315400-49318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:49315400-49319400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:49315400-49319400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr8:49315400-49320000	Weak transcription	Esophagus	oesophagus
19	chr8:49315400-49322200	Weak transcription	Ovary	ovary
20	chr8:49315800-49318600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:49315800-49318800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:49315800-49318800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr8:49315800-49319400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:49315800-49319400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:49316000-49318800	Weak transcription	Fetal Lung	lung
26	chr8:49318400-49319400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr8:49318400-49319800	Enhancers	HSMM	muscle

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