Variant report

Variant	rs11991365
Chromosome Location	chr8:49347619-49347620
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49347064..49348779-chr8:49356019..49358997,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10094661	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097514	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10107550	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10109005	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10109710	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10112025	0.85[AFR][1000 genomes]
rs10113165	0.82[AFR][1000 genomes]
rs11784649	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11984473	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985893	0.85[AFR][1000 genomes]
rs13439723	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047787	0.84[AFR][1000 genomes]
rs28516085	0.85[AFR][1000 genomes]
rs28669917	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28696798	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4554493	0.85[AFR][1000 genomes]
rs6992483	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7003636	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7006329	0.85[AFR][1000 genomes]
rs9298006	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49343800-49354000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:49345000-49352400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:49345600-49349200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:49345600-49350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:49345600-49350800	Weak transcription	Ovary	ovary
6	chr8:49345600-49351200	Weak transcription	Spleen	Spleen
7	chr8:49345800-49351800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:49346000-49347800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:49346200-49350400	Weak transcription	Aorta	Aorta
10	chr8:49346400-49349400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:49346400-49349600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:49346400-49350800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:49346400-49352400	Weak transcription	Adipose Nuclei	Adipose
14	chr8:49346800-49351200	Weak transcription	Fetal Lung	lung
15	chr8:49347000-49350800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:49347200-49348200	ZNF genes & repeats	Fetal Stomach	stomach
17	chr8:49347200-49351200	Weak transcription	Lung	lung
18	chr8:49347400-49351400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:49347600-49349600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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