Variant report

Variant	rs10094125
Chromosome Location	chr8:122645356-122645357
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10086278	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10089014	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10097083	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10102290	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11780881	0.85[ASN][1000 genomes]
rs11781907	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11784137	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11992999	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs16895859	0.86[JPT][hapmap]
rs17299925	0.86[JPT][hapmap]
rs17299960	0.86[JPT][hapmap]
rs17299987	0.86[JPT][hapmap]
rs1871884	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2385924	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4255143	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4437656	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4474031	0.82[ASN][1000 genomes]
rs4618701	0.82[CEU][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs4871210	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62524931	0.82[ASN][1000 genomes]
rs62524932	0.82[ASN][1000 genomes]
rs62524935	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62524936	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62526466	0.80[AMR][1000 genomes]
rs6651224	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6984484	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs6984839	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6998348	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7009945	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7016481	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7016956	0.82[ASN][1000 genomes]
rs7817920	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834907	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837322	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831446	chr8:122535039-122711959	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122627400-122649800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:122632000-122648800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:122636800-122647600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:122639200-122651400	Weak transcription	Brain Anterior Caudate	brain
5	chr8:122641600-122647600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:122642200-122646000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:122642600-122650800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:122643000-122645800	Genic enhancers	HSMM	muscle
9	chr8:122644000-122651400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:122644200-122647600	Weak transcription	Fetal Kidney	kidney
11	chr8:122644200-122650600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:122644400-122645400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:122644400-122648400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:122644400-122650800	Weak transcription	Fetal Stomach	stomach
15	chr8:122644400-122651200	Weak transcription	Brain Substantia Nigra	brain
16	chr8:122644400-122651400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:122644600-122645400	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:122644600-122645600	Weak transcription	Fetal Lung	lung
19	chr8:122644600-122645600	Weak transcription	NHLF	lung
20	chr8:122644600-122645800	Enhancers	NHDF-Ad	bronchial
21	chr8:122644600-122646400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:122644600-122647800	Genic enhancers	Osteobl	bone
23	chr8:122644600-122648200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:122644600-122648400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:122644600-122649800	Weak transcription	NH-A	brain
26	chr8:122644600-122650800	Weak transcription	A549	lung
27	chr8:122644600-122651200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:122644600-122651200	Weak transcription	HSMMtube	muscle
29	chr8:122644800-122645600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:122645000-122645600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:122645000-122648400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:122645200-122646600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:122645200-122648200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:122645200-122651200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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