Variant report

Variant	rs1871884
Chromosome Location	chr8:122630830-122630831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122629140..122631434-chr8:122633732..122636150,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10086278	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10089014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10094125	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10097083	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102290	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11780881	0.82[ASN][1000 genomes]
rs11781907	0.81[CEU][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs11784137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992999	0.81[CEU][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs16895859	0.86[JPT][hapmap]
rs17233161	0.86[CEU][hapmap]
rs17299925	0.86[JPT][hapmap]
rs17299960	0.86[JPT][hapmap]
rs17299987	0.86[JPT][hapmap]
rs2385924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4255143	0.81[CEU][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs4437656	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4474031	0.85[ASN][1000 genomes]
rs4618701	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4871210	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62524931	0.85[ASN][1000 genomes]
rs62524932	0.85[ASN][1000 genomes]
rs62524935	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524936	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984484	0.81[CEU][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6984839	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6998348	0.81[CEU][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7009945	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7016481	0.81[CEU][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7016956	0.85[ASN][1000 genomes]
rs7817920	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834455	0.93[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834907	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7837322	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831446	chr8:122535039-122711959	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122613000-122631800	Weak transcription	A549	lung
2	chr8:122615200-122644000	Weak transcription	Fetal Brain Male	brain
3	chr8:122616000-122640200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:122617800-122632000	Weak transcription	Fetal Stomach	stomach
5	chr8:122624400-122631000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:122624800-122640800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:122626800-122634400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:122626800-122643800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:122627000-122636200	Weak transcription	NH-A	brain
10	chr8:122627200-122632000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:122627200-122632000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:122627400-122631800	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:122627400-122649800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:122628200-122632400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:122628800-122631800	Weak transcription	Fetal Kidney	kidney
16	chr8:122629400-122632600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:122629600-122631800	Strong transcription	Osteobl	bone
18	chr8:122629600-122632000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:122629800-122631800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:122629800-122631800	Strong transcription	HSMM	muscle
21	chr8:122629800-122631800	Weak transcription	NHLF	lung
22	chr8:122629800-122632000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr8:122629800-122632200	Weak transcription	Fetal Lung	lung
24	chr8:122629800-122641000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:122630200-122634200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:122630400-122632400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:122630400-122633200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr8:122630600-122631600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:122630600-122631800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr8:122630600-122631800	Weak transcription	NHDF-Ad	bronchial
31	chr8:122630600-122636400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:122630800-122631800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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