Variant report

Variant	rs10097083
Chromosome Location	chr8:122628664-122628665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10086278	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10089014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10094125	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10102290	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11780881	0.82[ASN][1000 genomes]
rs11781907	0.85[ASN][1000 genomes]
rs11784137	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992999	0.85[ASN][1000 genomes]
rs16895859	0.84[JPT][hapmap]
rs17299925	0.84[JPT][hapmap]
rs17299960	0.83[JPT][hapmap]
rs17299987	0.84[JPT][hapmap]
rs1871884	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2385924	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4255143	0.85[ASN][1000 genomes]
rs4437656	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4474031	0.85[ASN][1000 genomes]
rs4618701	0.82[ASN][1000 genomes]
rs4871210	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62524931	0.85[ASN][1000 genomes]
rs62524932	0.85[ASN][1000 genomes]
rs62524935	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524936	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651224	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984484	0.85[ASN][1000 genomes]
rs6984839	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6998348	0.85[ASN][1000 genomes]
rs7009945	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7016481	0.85[ASN][1000 genomes]
rs7016956	0.85[ASN][1000 genomes]
rs7817920	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834455	0.86[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834907	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7837322	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831446	chr8:122535039-122711959	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122613000-122631800	Weak transcription	A549	lung
2	chr8:122615200-122644000	Weak transcription	Fetal Brain Male	brain
3	chr8:122616000-122640200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:122617800-122632000	Weak transcription	Fetal Stomach	stomach
5	chr8:122621200-122629600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:122623800-122629200	Strong transcription	HSMM	muscle
7	chr8:122624400-122629200	Strong transcription	Osteobl	bone
8	chr8:122624400-122629600	Strong transcription	Muscle Satellite Cultured Cells	--
9	chr8:122624400-122630600	Strong transcription	NHDF-Ad	bronchial
10	chr8:122624400-122631000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:122624600-122629400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:122624600-122629600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:122624800-122629600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:122624800-122630200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:122624800-122640800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:122625000-122629600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:122625000-122629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:122625800-122629800	Strong transcription	Fetal Lung	lung
19	chr8:122626800-122634400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr8:122626800-122643800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:122627000-122636200	Weak transcription	NH-A	brain
22	chr8:122627200-122632000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:122627200-122632000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:122627400-122629200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr8:122627400-122631800	Weak transcription	Fetal Muscle Leg	muscle
26	chr8:122627400-122649800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr8:122627600-122629200	Weak transcription	NHLF	lung
28	chr8:122628000-122629800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:122628200-122632400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:122628600-122629400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:122628600-122629600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:122628600-122629800	Strong transcription	Fetal Muscle Trunk	muscle

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