Variant report

Variant	rs1009887
Chromosome Location	chr7:105355772-105355773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105354511..105357215-chr7:105359337..105361077,2	K562	blood:
2	chr7:105355420..105358270-chr7:105359220..105361581,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13223436	1.00[EUR][1000 genomes]
rs13228177	0.83[AMR][1000 genomes]
rs13239864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34122802	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34225859	1.00[EUR][1000 genomes]
rs34332151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34803070	0.94[AMR][1000 genomes]
rs35347266	0.82[EUR][1000 genomes]
rs35621681	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35822107	0.87[EUR][1000 genomes]
rs35833104	0.82[EUR][1000 genomes]
rs35999324	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs500692	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66474882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66793617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66813327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67478261	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67617358	0.96[EUR][1000 genomes]
rs68163474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71564734	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs71564735	0.82[EUR][1000 genomes]
rs73411042	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105349000-105374800	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:105349800-105356200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr7:105352400-105362600	Weak transcription	Stomach Mucosa	stomach
4	chr7:105352600-105355800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:105352600-105358800	Weak transcription	Gastric	stomach
6	chr7:105352600-105388600	Weak transcription	Aorta	Aorta
7	chr7:105352800-105359800	Weak transcription	Fetal Lung	lung
8	chr7:105352800-105361800	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:105352800-105364000	Weak transcription	Lung	lung
10	chr7:105352800-105364000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:105352800-105383000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:105352800-105383800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:105352800-105392400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:105353000-105359000	Weak transcription	Liver	Liver
15	chr7:105353000-105361800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:105353200-105358600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr7:105353400-105374000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr7:105353600-105356000	Enhancers	Fetal Heart	heart
19	chr7:105353800-105356400	Enhancers	Placenta	Placenta
20	chr7:105353800-105360000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:105353800-105373000	Weak transcription	Esophagus	oesophagus
22	chr7:105354000-105358800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:105354000-105361800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr7:105354000-105374800	Weak transcription	Spleen	Spleen
25	chr7:105354200-105358600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:105354200-105359400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:105354400-105358600	Weak transcription	Fetal Brain Female	brain
28	chr7:105354400-105358800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:105354400-105359000	Weak transcription	Adipose Nuclei	Adipose
30	chr7:105354400-105359000	Weak transcription	Right Atrium	heart
31	chr7:105354400-105360000	Weak transcription	Fetal Intestine Large	intestine
32	chr7:105354400-105362000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:105354400-105382400	Weak transcription	Primary T cells from cord blood	blood
34	chr7:105354400-105390000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr7:105354400-105399800	Weak transcription	Ovary	ovary
36	chr7:105354600-105358600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:105354600-105359000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:105354600-105359000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr7:105354600-105392000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:105354800-105355800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:105354800-105355800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr7:105354800-105355800	Weak transcription	Right Ventricle	heart
43	chr7:105354800-105358600	Weak transcription	Fetal Intestine Small	intestine
44	chr7:105354800-105358600	Weak transcription	Fetal Stomach	stomach
45	chr7:105354800-105358600	Weak transcription	Psoas Muscle	Psoas
46	chr7:105354800-105358800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr7:105354800-105359600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr7:105354800-105359800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:105354800-105364000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:105354800-105368200	Weak transcription	Hela-S3	cervix

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