Variant report

Variant	rs66474882
Chromosome Location	chr7:105354662-105354663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105354511..105357215-chr7:105359337..105361077,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1009887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13223436	1.00[EUR][1000 genomes]
rs13228177	0.83[AMR][1000 genomes]
rs13239864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34122802	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34225859	1.00[EUR][1000 genomes]
rs34332151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34803070	0.94[AMR][1000 genomes]
rs35347266	0.82[EUR][1000 genomes]
rs35621681	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35822107	0.87[EUR][1000 genomes]
rs35833104	0.82[EUR][1000 genomes]
rs35999324	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs500692	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66793617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66813327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67478261	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67617358	0.96[EUR][1000 genomes]
rs68163474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71564734	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs71564735	0.82[EUR][1000 genomes]
rs73411042	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105349000-105374800	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:105349200-105354800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:105349200-105355400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:105349800-105356200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr7:105350400-105354800	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr7:105351400-105355000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:105352200-105354800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr7:105352400-105362600	Weak transcription	Stomach Mucosa	stomach
9	chr7:105352600-105355800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:105352600-105358800	Weak transcription	Gastric	stomach
11	chr7:105352600-105388600	Weak transcription	Aorta	Aorta
12	chr7:105352800-105359800	Weak transcription	Fetal Lung	lung
13	chr7:105352800-105361800	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:105352800-105364000	Weak transcription	Lung	lung
15	chr7:105352800-105364000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:105352800-105383000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:105352800-105383800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:105352800-105392400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:105353000-105355400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:105353000-105359000	Weak transcription	Liver	Liver
21	chr7:105353000-105361800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:105353200-105358600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr7:105353400-105374000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr7:105353600-105354800	Strong transcription	Fetal Stomach	stomach
25	chr7:105353600-105354800	Enhancers	Hela-S3	cervix
26	chr7:105353600-105355000	Enhancers	HSMMtube	muscle
27	chr7:105353600-105355200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:105353600-105355600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:105353600-105356000	Enhancers	Fetal Heart	heart
30	chr7:105353800-105354800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:105353800-105354800	Enhancers	Right Ventricle	heart
32	chr7:105353800-105355000	Enhancers	HMEC	breast
33	chr7:105353800-105355000	Enhancers	NHDF-Ad	bronchial
34	chr7:105353800-105355000	Enhancers	Osteobl	bone
35	chr7:105353800-105355600	Enhancers	Left Ventricle	heart
36	chr7:105353800-105356400	Enhancers	Placenta	Placenta
37	chr7:105353800-105360000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:105353800-105373000	Weak transcription	Esophagus	oesophagus
39	chr7:105354000-105355000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr7:105354000-105355000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:105354000-105355000	Weak transcription	Pancreas	Pancrea
42	chr7:105354000-105358800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:105354000-105361800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr7:105354000-105374800	Weak transcription	Spleen	Spleen
45	chr7:105354200-105354800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:105354200-105354800	Enhancers	Psoas Muscle	Psoas
47	chr7:105354200-105354800	Enhancers	HSMM	muscle
48	chr7:105354200-105355000	Enhancers	NHEK	skin
49	chr7:105354200-105355200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:105354200-105358600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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