Variant report

Variant	rs34122802
Chromosome Location	chr7:105364303-105364304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1009887	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13223436	0.96[EUR][1000 genomes]
rs13239864	0.96[EUR][1000 genomes]
rs34225859	0.96[EUR][1000 genomes]
rs34332151	0.96[EUR][1000 genomes]
rs35621681	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35822107	0.83[EUR][1000 genomes]
rs35999324	0.88[EUR][1000 genomes]
rs500692	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66474882	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs66793617	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs66813327	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs67478261	0.91[EUR][1000 genomes]
rs67617358	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68163474	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71564734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73411042	0.96[EUR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105349000-105374800	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:105352600-105388600	Weak transcription	Aorta	Aorta
3	chr7:105352800-105383000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:105352800-105383800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:105352800-105392400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:105353400-105374000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:105353800-105373000	Weak transcription	Esophagus	oesophagus
8	chr7:105354000-105374800	Weak transcription	Spleen	Spleen
9	chr7:105354400-105382400	Weak transcription	Primary T cells from cord blood	blood
10	chr7:105354400-105390000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr7:105354400-105399800	Weak transcription	Ovary	ovary
12	chr7:105354600-105392000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:105354800-105368200	Weak transcription	Hela-S3	cervix
14	chr7:105354800-105387600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:105355000-105368400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:105355000-105401000	Weak transcription	NHEK	skin
17	chr7:105355400-105364400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:105355800-105381800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:105356600-105366800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:105357200-105379200	Weak transcription	Thymus	Thymus
21	chr7:105359400-105374800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:105359600-105366800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:105359600-105368800	Weak transcription	Liver	Liver
24	chr7:105359800-105369000	Weak transcription	Adipose Nuclei	Adipose
25	chr7:105359800-105406200	Weak transcription	Gastric	stomach
26	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
27	chr7:105360000-105391400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:105360200-105368800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr7:105360400-105382600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:105360600-105366600	Weak transcription	Fetal Intestine Large	intestine
31	chr7:105360600-105375000	Weak transcription	NHLF	lung
32	chr7:105360600-105388200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:105360800-105406200	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:105361200-105394400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:105361800-105365800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:105362000-105381400	Weak transcription	Fetal Intestine Small	intestine
37	chr7:105362400-105372600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr7:105362400-105373000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:105362400-105374800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:105362800-105375000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:105362800-105383800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr7:105363400-105364600	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr7:105363400-105364600	Enhancers	Fetal Stomach	stomach
44	chr7:105363400-105364800	Enhancers	Brain Substantia Nigra	brain
45	chr7:105363400-105374800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr7:105363600-105364600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:105363600-105364600	Enhancers	Fetal Lung	lung
48	chr7:105363600-105364800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:105363800-105364600	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr7:105363800-105364800	Enhancers	HUES6 Cell Line	embryonic stem cell

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