Variant report

Variant	rs13239864
Chromosome Location	chr7:105349826-105349827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1009887	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13223436	1.00[EUR][1000 genomes]
rs13228177	0.83[AMR][1000 genomes]
rs34122802	0.96[EUR][1000 genomes]
rs34225859	1.00[EUR][1000 genomes]
rs34332151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34803070	0.94[AMR][1000 genomes]
rs35347266	0.82[EUR][1000 genomes]
rs35621681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35822107	0.87[EUR][1000 genomes]
rs35833104	0.82[EUR][1000 genomes]
rs35999324	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs500692	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66474882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66793617	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66813327	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67478261	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67617358	0.96[EUR][1000 genomes]
rs68163474	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71564734	0.98[EUR][1000 genomes]
rs71564735	0.82[EUR][1000 genomes]
rs73411042	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105330400-105352200	Weak transcription	Gastric	stomach
2	chr7:105332200-105353200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:105332600-105352200	Weak transcription	Aorta	Aorta
4	chr7:105332800-105350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:105332800-105351400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:105332800-105351600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:105332800-105352000	Weak transcription	Colonic Mucosa	Colon
8	chr7:105333000-105350400	Weak transcription	Fetal Brain Female	brain
9	chr7:105337000-105353800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:105337200-105350400	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:105340600-105351400	Weak transcription	Placenta	Placenta
12	chr7:105342800-105350400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:105342800-105351000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:105342800-105351200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:105343000-105351200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:105344600-105352000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:105344600-105352000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:105345000-105352000	Weak transcription	Liver	Liver
19	chr7:105346000-105354600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:105346200-105354200	Weak transcription	Psoas Muscle	Psoas
21	chr7:105346200-105354400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:105346400-105351000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:105346400-105352400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:105346600-105351800	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:105347800-105351600	Weak transcription	Fetal Intestine Large	intestine
26	chr7:105348000-105350400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:105348000-105351800	Weak transcription	Brain Angular Gyrus	brain
28	chr7:105348000-105352000	Weak transcription	Lung	lung
29	chr7:105348200-105350200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:105348200-105351400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr7:105348200-105351400	Weak transcription	Fetal Stomach	stomach
32	chr7:105348200-105351800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr7:105348200-105352000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:105348200-105352000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr7:105348200-105352000	Weak transcription	HSMMtube	muscle
36	chr7:105348400-105351200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:105348400-105351400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:105348400-105351400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:105348600-105352000	Weak transcription	Ovary	ovary
40	chr7:105348800-105350400	Weak transcription	Fetal Intestine Small	intestine
41	chr7:105348800-105351200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:105348800-105352000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr7:105348800-105352000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:105349000-105350800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:105349000-105351200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:105349000-105351400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:105349000-105352000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:105349000-105353600	Weak transcription	Fetal Heart	heart
49	chr7:105349000-105374800	Weak transcription	Colon Smooth Muscle	Colon
50	chr7:105349200-105354800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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