Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10088356	1.00[AMR][1000 genomes]
rs10094257	1.00[AMR][1000 genomes]
rs10101437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101969	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104566	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106797	1.00[AMR][1000 genomes]
rs10111321	1.00[AMR][1000 genomes]
rs10282856	1.00[AMR][1000 genomes]
rs10283042	1.00[AMR][1000 genomes]
rs12541707	0.89[YRI][hapmap]
rs28376366	1.00[AMR][1000 genomes]
rs28420931	1.00[AMR][1000 genomes]
rs28429447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28562037	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28574640	1.00[AMR][1000 genomes]
rs28615617	1.00[AMR][1000 genomes]
rs28621414	1.00[AMR][1000 genomes]
rs28751973	1.00[AMR][1000 genomes]
rs28764900	1.00[AMR][1000 genomes]
rs28789069	1.00[AMR][1000 genomes]
rs28799874	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28814120	1.00[AMR][1000 genomes]
rs28840383	1.00[AMR][1000 genomes]
rs61498509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6985653	0.84[YRI][hapmap]
rs7357389	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv525765	chr8:51269514-51284501	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3369164	chr8:51278449-51280447	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51276600-51289000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:51276800-51278800	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search: