Variant report

Variant	rs10106797
Chromosome Location	chr8:51262488-51262489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10088356	1.00[AMR][1000 genomes]
rs10094257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100260	1.00[AMR][1000 genomes]
rs10101437	1.00[AMR][1000 genomes]
rs10101969	1.00[AMR][1000 genomes]
rs10104566	1.00[AMR][1000 genomes]
rs10111321	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10283222	1.00[AFR][1000 genomes]
rs28376366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28420931	1.00[AMR][1000 genomes]
rs28429447	1.00[AMR][1000 genomes]
rs28562037	1.00[AMR][1000 genomes]
rs28574640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28615617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28621414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28751973	1.00[AMR][1000 genomes]
rs28764900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28789069	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28799874	1.00[AMR][1000 genomes]
rs28814120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28840383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61498509	1.00[AMR][1000 genomes]
rs7357389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2753909	chr8:51261103-51269514	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51243200-51271600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51262200-51262800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:51262200-51263000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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