Variant report

Variant	rs10100638
Chromosome Location	chr8:19826690-19826691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19820325..19822189-chr8:19825271..19827083,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10091085	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092029	1.00[EUR][1000 genomes]
rs10095784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10100898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10100904	1.00[EUR][1000 genomes]
rs10283151	1.00[ASW][hapmap];0.87[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17091602	1.00[EUR][1000 genomes]
rs17091626	1.00[EUR][1000 genomes]
rs17091629	1.00[EUR][1000 genomes]
rs2083638	1.00[EUR][1000 genomes]
rs2270649	1.00[TSI][hapmap]
rs279	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs284	1.00[EUR][1000 genomes]
rs28424158	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28439839	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28514364	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28595414	1.00[EUR][1000 genomes]
rs28599962	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28681081	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28716400	1.00[EUR][1000 genomes]
rs2898493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs290	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs307	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs313	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55914530	1.00[EUR][1000 genomes]
rs6651484	1.00[EUR][1000 genomes]
rs7005541	1.00[EUR][1000 genomes]
rs73667443	1.00[EUR][1000 genomes]
rs73667444	1.00[EUR][1000 genomes]
rs73667445	1.00[EUR][1000 genomes]
rs73667473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667475	1.00[EUR][1000 genomes]
rs7822582	1.00[EUR][1000 genomes]
rs7833094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843393	1.00[EUR][1000 genomes]
rs7845291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv890632	chr8:19816371-19853146	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19820600-19833400	Weak transcription	Psoas Muscle	Psoas
2	chr8:19823400-19828200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:19824800-19830000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:19826200-19828800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:19826600-19827000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr8:19826600-19827000	Enhancers	Adipose Nuclei	Adipose
7	chr8:19826600-19828400	Enhancers	Monocytes-CD14+_RO01746	blood

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