Variant report

Variant	rs6651484
Chromosome Location	chr8:19830509-19830510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10091085	1.00[EUR][1000 genomes]
rs10092029	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095784	1.00[EUR][1000 genomes]
rs10100638	1.00[EUR][1000 genomes]
rs10100898	1.00[EUR][1000 genomes]
rs10100904	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10283151	1.00[EUR][1000 genomes]
rs17091602	1.00[EUR][1000 genomes]
rs17091626	1.00[EUR][1000 genomes]
rs17091629	1.00[EUR][1000 genomes]
rs2083638	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs279	1.00[EUR][1000 genomes]
rs284	1.00[EUR][1000 genomes]
rs28424158	1.00[EUR][1000 genomes]
rs28439839	1.00[EUR][1000 genomes]
rs28514364	1.00[EUR][1000 genomes]
rs28595414	1.00[EUR][1000 genomes]
rs28599962	1.00[EUR][1000 genomes]
rs28681081	1.00[EUR][1000 genomes]
rs28716400	1.00[EUR][1000 genomes]
rs2898493	1.00[EUR][1000 genomes]
rs290	1.00[EUR][1000 genomes]
rs307	1.00[EUR][1000 genomes]
rs313	1.00[EUR][1000 genomes]
rs55914530	1.00[EUR][1000 genomes]
rs7005541	1.00[EUR][1000 genomes]
rs73667443	1.00[EUR][1000 genomes]
rs73667444	1.00[EUR][1000 genomes]
rs73667445	1.00[EUR][1000 genomes]
rs73667473	1.00[EUR][1000 genomes]
rs73667474	1.00[EUR][1000 genomes]
rs73667475	1.00[EUR][1000 genomes]
rs7822582	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833094	1.00[EUR][1000 genomes]
rs7834459	1.00[EUR][1000 genomes]
rs7843393	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845291	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv890632	chr8:19816371-19853146	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19820600-19833400	Weak transcription	Psoas Muscle	Psoas
2	chr8:19828000-19830600	Weak transcription	Adipose Nuclei	Adipose
3	chr8:19828400-19832000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr8:19828800-19831600	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links