Variant report

Variant	rs55914530
Chromosome Location	chr8:19735862-19735863
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19726580..19729500-chr8:19735751..19737530,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10091085	1.00[EUR][1000 genomes]
rs10092029	1.00[EUR][1000 genomes]
rs10095784	1.00[EUR][1000 genomes]
rs10100638	1.00[EUR][1000 genomes]
rs10100898	1.00[EUR][1000 genomes]
rs10100904	1.00[EUR][1000 genomes]
rs10283151	1.00[EUR][1000 genomes]
rs17091602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17091626	1.00[EUR][1000 genomes]
rs17091629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17091660	1.00[AMR][1000 genomes]
rs2083638	1.00[EUR][1000 genomes]
rs279	1.00[EUR][1000 genomes]
rs284	1.00[EUR][1000 genomes]
rs28424158	1.00[EUR][1000 genomes]
rs28439839	1.00[EUR][1000 genomes]
rs28514364	1.00[EUR][1000 genomes]
rs28595414	1.00[EUR][1000 genomes]
rs28599962	1.00[EUR][1000 genomes]
rs28681081	1.00[EUR][1000 genomes]
rs28716400	1.00[EUR][1000 genomes]
rs2898493	1.00[EUR][1000 genomes]
rs290	1.00[EUR][1000 genomes]
rs307	1.00[EUR][1000 genomes]
rs313	1.00[EUR][1000 genomes]
rs6651484	1.00[EUR][1000 genomes]
rs7005541	1.00[EUR][1000 genomes]
rs73602829	1.00[EUR][1000 genomes]
rs73667443	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667445	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667473	1.00[EUR][1000 genomes]
rs73667474	1.00[EUR][1000 genomes]
rs73667475	1.00[EUR][1000 genomes]
rs7822582	1.00[EUR][1000 genomes]
rs7833094	1.00[EUR][1000 genomes]
rs7834459	1.00[EUR][1000 genomes]
rs7843393	1.00[EUR][1000 genomes]
rs7845291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv890631	chr8:19712564-19756813	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv520043	chr8:19733568-19738812	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19733200-19736400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:19735200-19736200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr8:19735400-19738000	Weak transcription	Adipose Nuclei	Adipose
4	chr8:19735800-19736000	Enhancers	Lung	lung
5	chr8:19735800-19738400	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links