Variant report

Variant	rs17091629
Chromosome Location	chr8:19747874-19747875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19747137..19751203-chr8:19751679..19754086,4	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10091085	1.00[EUR][1000 genomes]
rs10092029	1.00[EUR][1000 genomes]
rs10095784	1.00[EUR][1000 genomes]
rs10100638	1.00[EUR][1000 genomes]
rs10100898	1.00[EUR][1000 genomes]
rs10100904	1.00[EUR][1000 genomes]
rs10283151	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17091547	1.00[MEX][hapmap]
rs17091602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17091626	1.00[EUR][1000 genomes]
rs17091660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17091775	1.00[MEX][hapmap]
rs17116619	1.00[MEX][hapmap]
rs2083638	1.00[EUR][1000 genomes]
rs279	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs284	1.00[EUR][1000 genomes]
rs28424158	1.00[EUR][1000 genomes]
rs28439839	1.00[EUR][1000 genomes]
rs28514364	1.00[EUR][1000 genomes]
rs28595414	1.00[EUR][1000 genomes]
rs28599962	1.00[EUR][1000 genomes]
rs28681081	1.00[EUR][1000 genomes]
rs28716400	1.00[EUR][1000 genomes]
rs2898493	1.00[EUR][1000 genomes]
rs290	1.00[EUR][1000 genomes]
rs307	1.00[EUR][1000 genomes]
rs313	1.00[EUR][1000 genomes]
rs55914530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651484	1.00[EUR][1000 genomes]
rs7005541	1.00[EUR][1000 genomes]
rs73667443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667445	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667473	1.00[EUR][1000 genomes]
rs73667474	1.00[EUR][1000 genomes]
rs73667475	1.00[EUR][1000 genomes]
rs7822582	1.00[EUR][1000 genomes]
rs7832092	1.00[MEX][hapmap]
rs7833094	1.00[EUR][1000 genomes]
rs7834459	1.00[EUR][1000 genomes]
rs7843393	1.00[EUR][1000 genomes]
rs7845291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv890631	chr8:19712564-19756813	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19745400-19748400	Weak transcription	Fetal Lung	lung
2	chr8:19747000-19748400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr8:19747200-19748400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr8:19747600-19749400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:19747800-19750200	Enhancers	Adipose Nuclei	Adipose

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