Variant report

Variant	rs10101428
Chromosome Location	chr8:85473660-85473661
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:85469212..85470948-chr8:85472701..85475388,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10090567	0.95[EUR][1000 genomes]
rs10095469	0.95[EUR][1000 genomes]
rs10096184	0.95[EUR][1000 genomes]
rs10101057	0.95[EUR][1000 genomes]
rs10103984	1.00[EUR][1000 genomes]
rs10106490	0.95[EUR][1000 genomes]
rs10106879	0.95[EUR][1000 genomes]
rs10107192	1.00[EUR][1000 genomes]
rs10108862	0.95[EUR][1000 genomes]
rs10110773	0.95[EUR][1000 genomes]
rs10111461	0.95[EUR][1000 genomes]
rs10504806	1.00[EUR][1000 genomes]
rs11984578	1.00[EUR][1000 genomes]
rs11985257	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs11985284	1.00[EUR][1000 genomes]
rs11988419	1.00[EUR][1000 genomes]
rs11989935	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs11994516	1.00[EUR][1000 genomes]
rs1320767	0.84[YRI][hapmap]
rs1488702	1.00[EUR][1000 genomes]
rs16913052	1.00[EUR][1000 genomes]
rs2029358	1.00[EUR][1000 genomes]
rs28377892	0.95[EUR][1000 genomes]
rs28410514	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552445	0.95[EUR][1000 genomes]
rs28615259	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673182	0.95[EUR][1000 genomes]
rs28682420	0.95[EUR][1000 genomes]
rs28690245	0.95[EUR][1000 genomes]
rs28701915	1.00[EUR][1000 genomes]
rs28748272	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28750120	0.95[EUR][1000 genomes]
rs28753755	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28792691	1.00[EUR][1000 genomes]
rs28838665	1.00[EUR][1000 genomes]
rs35982821	0.89[EUR][1000 genomes]
rs7009141	1.00[EUR][1000 genomes]
rs73294048	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73294082	1.00[EUR][1000 genomes]
rs73294084	1.00[EUR][1000 genomes]
rs7820782	0.95[EUR][1000 genomes]
rs7834473	0.95[EUR][1000 genomes]
rs7836891	0.95[EUR][1000 genomes]
rs7839325	0.95[EUR][1000 genomes]
rs7844228	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links