Variant report

Variant	rs10101613
Chromosome Location	chr8:59145314-59145315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1876380	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28795765	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970748	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970750	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2977370	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2977371	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55719516	1.00[ASN][1000 genomes]
rs7003790	1.00[ASN][1000 genomes]
rs7007843	1.00[ASN][1000 genomes]
rs72662443	1.00[ASN][1000 genomes]
rs72662446	1.00[ASN][1000 genomes]
rs72662466	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662476	0.89[ASN][1000 genomes]
rs72662477	0.89[ASN][1000 genomes]
rs72662479	0.89[ASN][1000 genomes]
rs72662481	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526320	chr8:59138364-59148256	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59140200-59149600	Weak transcription	Fetal Lung	lung
2	chr8:59142200-59146400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:59144000-59145400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:59144200-59147200	Weak transcription	GM12878-XiMat	blood
5	chr8:59144200-59150400	Weak transcription	Left Ventricle	heart
6	chr8:59144600-59145800	Enhancers	HepG2	liver
7	chr8:59144600-59146200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:59144600-59146200	Weak transcription	Placenta	Placenta
9	chr8:59145000-59146400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:59145200-59145800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:59145200-59146000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:59145200-59146000	Enhancers	Liver	Liver
13	chr8:59145200-59147000	Enhancers	NHDF-Ad	bronchial
14	chr8:59145200-59148600	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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