Variant report

Variant	rs72662443
Chromosome Location	chr8:59108137-59108138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59106915..59110868-chr8:59145602..59149155,4	MCF-7	breast:
2	chr8:58909223..58911997-chr8:59106137..59108428,2	MCF-7	breast:
3	chr8:59107209..59109473-chr8:59113405..59116063,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10101613	1.00[ASN][1000 genomes]
rs1876380	1.00[ASN][1000 genomes]
rs28795765	1.00[ASN][1000 genomes]
rs2970748	1.00[ASN][1000 genomes]
rs2970750	1.00[ASN][1000 genomes]
rs2977370	1.00[ASN][1000 genomes]
rs2977371	1.00[ASN][1000 genomes]
rs4531044	1.00[ASN][1000 genomes]
rs55719516	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471687	0.91[EUR][1000 genomes]
rs7003790	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007843	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662446	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662447	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72662466	1.00[ASN][1000 genomes]
rs72662476	0.89[ASN][1000 genomes]
rs72662477	0.89[ASN][1000 genomes]
rs72662479	0.89[ASN][1000 genomes]
rs72662481	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59103800-59110400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59104400-59108400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:59104400-59116200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59105000-59108200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:59105000-59109800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:59105000-59110000	Weak transcription	Fetal Stomach	stomach
7	chr8:59105200-59108200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:59105200-59114800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:59105400-59108200	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:59105600-59108400	Weak transcription	HSMM	muscle
11	chr8:59105800-59108200	Weak transcription	NH-A	brain
12	chr8:59105800-59108400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:59105800-59108400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr8:59106600-59108200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:59106600-59109200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:59107000-59108200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:59107400-59108200	Weak transcription	Hela-S3	cervix
18	chr8:59108000-59110000	Enhancers	HMEC	breast
19	chr8:59108000-59110000	Enhancers	NHEK	skin
20	chr8:59108000-59110800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:59108000-59111000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:59108000-59111000	Enhancers	NHDF-Ad	bronchial

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