Variant report

Variant	rs55719516
Chromosome Location	chr8:59114301-59114302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10101613	1.00[ASN][1000 genomes]
rs1876380	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28795765	1.00[ASN][1000 genomes]
rs2970748	1.00[ASN][1000 genomes]
rs2970750	1.00[ASN][1000 genomes]
rs2977370	1.00[ASN][1000 genomes]
rs2977371	1.00[ASN][1000 genomes]
rs4531044	1.00[ASN][1000 genomes]
rs6471687	0.94[EUR][1000 genomes]
rs7003790	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007843	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662443	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662446	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662447	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72662466	1.00[ASN][1000 genomes]
rs72662476	0.89[ASN][1000 genomes]
rs72662477	0.89[ASN][1000 genomes]
rs72662479	0.89[ASN][1000 genomes]
rs72662481	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59104400-59116200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:59105200-59114800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:59110000-59115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:59110000-59124600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:59110800-59115000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:59110800-59121400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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