Variant report

Variant	rs4531044
Chromosome Location	chr8:59145966-59145967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59145400..59147807-chr8:59266194..59268454,2	MCF-7	breast:
2	chr8:58909908..58910907-chr8:59145891..59146498,2	MCF-7	breast:
3	chr8:59144043..59146541-chr8:59150613..59152930,2	K562	blood:
4	chr8:58906362..58910518-chr8:59145004..59149868,5	MCF-7	breast:
5	chr8:59106915..59110868-chr8:59145602..59149155,4	MCF-7	breast:
6	chr8:58979230..58980915-chr8:59145278..59146797,2	MCF-7	breast:
7	chr8:59143409..59146068-chr8:59158188..59161044,2	MCF-7	breast:
8	chr8:58989456..58993031-chr8:59145472..59149096,3	MCF-7	breast:
9	chr8:59144776..59146918-chr8:59147975..59150397,2	K562	blood:
10	chr8:59060739..59063586-chr8:59145655..59147494,2	MCF-7	breast:
11	chr8:59049598..59053395-chr8:59145380..59148312,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10101613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876380	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28795765	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970748	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970750	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2977370	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2977371	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55719516	1.00[ASN][1000 genomes]
rs7003790	1.00[ASN][1000 genomes]
rs7007843	1.00[ASN][1000 genomes]
rs72662443	1.00[ASN][1000 genomes]
rs72662446	1.00[ASN][1000 genomes]
rs72662466	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662476	0.89[ASN][1000 genomes]
rs72662477	0.89[ASN][1000 genomes]
rs72662479	0.89[ASN][1000 genomes]
rs72662481	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526320	chr8:59138364-59148256	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59140200-59149600	Weak transcription	Fetal Lung	lung
2	chr8:59142200-59146400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:59144200-59147200	Weak transcription	GM12878-XiMat	blood
4	chr8:59144200-59150400	Weak transcription	Left Ventricle	heart
5	chr8:59144600-59146200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:59144600-59146200	Weak transcription	Placenta	Placenta
7	chr8:59145000-59146400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:59145200-59146000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:59145200-59146000	Enhancers	Liver	Liver
10	chr8:59145200-59147000	Enhancers	NHDF-Ad	bronchial
11	chr8:59145200-59148600	Enhancers	Fetal Muscle Leg	muscle
12	chr8:59145600-59146000	Enhancers	NH-A	brain
13	chr8:59145800-59146800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links