Variant report

Variant	rs10108043
Chromosome Location	chr8:35603788-35603789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10095118	0.81[ASN][1000 genomes]
rs10101908	0.93[ASN][1000 genomes]
rs11997398	0.88[ASN][1000 genomes]
rs12681866	0.99[ASN][1000 genomes]
rs1347609	0.98[ASN][1000 genomes]
rs28432136	0.93[ASN][1000 genomes]
rs28459520	0.99[ASN][1000 genomes]
rs28699490	0.99[ASN][1000 genomes]
rs4295659	0.81[ASN][1000 genomes]
rs4538874	0.99[ASN][1000 genomes]
rs6468340	0.93[ASN][1000 genomes]
rs7833421	1.00[ASN][1000 genomes]
rs934649	0.85[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs9656774	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2754662	chr8:35558658-35648958	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35576000-35631600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:35582000-35640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:35590200-35606000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:35591400-35608000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:35591600-35611800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:35591800-35608000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:35591800-35611200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:35591800-35611800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:35595200-35609400	Weak transcription	Fetal Kidney	kidney
10	chr8:35597800-35612200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:35598600-35606400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:35598800-35608000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr8:35598800-35611400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:35598800-35611800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr8:35600400-35609800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:35603200-35605000	Enhancers	Fetal Brain Female	brain
17	chr8:35603200-35607200	Enhancers	Fetal Brain Male	brain
18	chr8:35603200-35624800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:35603400-35604200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr8:35603600-35605800	Enhancers	Brain Germinal Matrix	brain

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