Variant report
Variant | rs4295659 |
---|---|
Chromosome Location | chr8:35678977-35678978 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:7 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr17:41399296..41402359-chr8:35678068..35681088,3 | MCF-7 | breast: | |
2 | chr17:41380631..41382205-chr8:35678068..35679588,2 | MCF-7 | breast: | |
3 | chr17:41463858..41466219-chr8:35678069..35679569,3 | K562 | blood: | |
4 | chr17:41400768..41402617-chr8:35678068..35679569,3 | K562 | blood: | |
5 | chr17:41464397..41466335-chr8:35678069..35679588,3 | K562 | blood: | |
6 | chr3:73159093..73162068-chr8:35678068..35679569,2 | MCF-7 | breast: | |
7 | chr17:41401117..41402640-chr8:35678068..35679569,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000188825 | Chromatin interaction |
ENSG00000223247 | Chromatin interaction |
ENSG00000236383 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10095118 | 1.00[ASN][1000 genomes] |
rs10101908 | 0.88[ASN][1000 genomes] |
rs10106027 | 0.91[ASN][1000 genomes] |
rs10108043 | 0.81[ASN][1000 genomes] |
rs10503983 | 1.00[EUR][1000 genomes] |
rs11984500 | 1.00[EUR][1000 genomes] |
rs11985711 | 1.00[EUR][1000 genomes] |
rs11986538 | 1.00[EUR][1000 genomes] |
rs11987769 | 1.00[EUR][1000 genomes] |
rs11988094 | 1.00[EUR][1000 genomes] |
rs11989128 | 1.00[EUR][1000 genomes] |
rs11989578 | 1.00[EUR][1000 genomes] |
rs11992482 | 1.00[EUR][1000 genomes] |
rs11992489 | 1.00[EUR][1000 genomes] |
rs11992734 | 1.00[EUR][1000 genomes] |
rs11992799 | 1.00[EUR][1000 genomes] |
rs11993299 | 1.00[EUR][1000 genomes] |
rs11994299 | 1.00[EUR][1000 genomes] |
rs11994324 | 1.00[EUR][1000 genomes] |
rs11994757 | 1.00[EUR][1000 genomes] |
rs11995446 | 1.00[EUR][1000 genomes] |
rs11995471 | 1.00[EUR][1000 genomes] |
rs11996057 | 1.00[EUR][1000 genomes] |
rs11997398 | 0.93[ASN][1000 genomes] |
rs12681657 | 0.85[ASN][1000 genomes] |
rs12681866 | 0.80[ASN][1000 genomes] |
rs1347609 | 0.81[ASN][1000 genomes] |
rs1436611 | 1.00[EUR][1000 genomes] |
rs1436614 | 1.00[EUR][1000 genomes] |
rs1436615 | 1.00[EUR][1000 genomes] |
rs16884268 | 1.00[EUR][1000 genomes] |
rs16884297 | 1.00[EUR][1000 genomes] |
rs16884299 | 1.00[EUR][1000 genomes] |
rs16884300 | 1.00[EUR][1000 genomes] |
rs16884301 | 1.00[EUR][1000 genomes] |
rs16884304 | 1.00[EUR][1000 genomes] |
rs16884305 | 1.00[EUR][1000 genomes] |
rs16884340 | 1.00[EUR][1000 genomes] |
rs16884343 | 1.00[EUR][1000 genomes] |
rs16884349 | 1.00[EUR][1000 genomes] |
rs16884352 | 1.00[EUR][1000 genomes] |
rs16884360 | 1.00[EUR][1000 genomes] |
rs16884367 | 1.00[EUR][1000 genomes] |
rs16884371 | 1.00[EUR][1000 genomes] |
rs16884375 | 1.00[EUR][1000 genomes] |
rs16884401 | 1.00[EUR][1000 genomes] |
rs16884403 | 1.00[EUR][1000 genomes] |
rs16884404 | 1.00[EUR][1000 genomes] |
rs16884405 | 1.00[EUR][1000 genomes] |
rs16884409 | 1.00[EUR][1000 genomes] |
rs16884412 | 0.83[EUR][1000 genomes] |
rs16884418 | 1.00[EUR][1000 genomes] |
rs16884431 | 1.00[EUR][1000 genomes] |
rs16884441 | 1.00[EUR][1000 genomes] |
rs16884444 | 1.00[EUR][1000 genomes] |
rs16884452 | 1.00[EUR][1000 genomes] |
rs16884454 | 1.00[EUR][1000 genomes] |
rs16884457 | 1.00[EUR][1000 genomes] |
rs16884467 | 1.00[EUR][1000 genomes] |
rs16884502 | 1.00[EUR][1000 genomes] |
rs2043659 | 1.00[EUR][1000 genomes] |
rs28432136 | 0.88[ASN][1000 genomes] |
rs28459520 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs28693720 | 0.91[ASN][1000 genomes] |
rs28699490 | 0.82[ASN][1000 genomes] |
rs4538874 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs55666865 | 1.00[EUR][1000 genomes] |
rs55678313 | 1.00[EUR][1000 genomes] |
rs55771007 | 1.00[EUR][1000 genomes] |
rs55813330 | 1.00[EUR][1000 genomes] |
rs55860965 | 1.00[EUR][1000 genomes] |
rs56085711 | 1.00[EUR][1000 genomes] |
rs56106393 | 1.00[EUR][1000 genomes] |
rs56173644 | 1.00[EUR][1000 genomes] |
rs56280904 | 1.00[EUR][1000 genomes] |
rs57687144 | 1.00[EUR][1000 genomes] |
rs57917672 | 0.86[EUR][1000 genomes] |
rs58260432 | 1.00[EUR][1000 genomes] |
rs58262186 | 1.00[EUR][1000 genomes] |
rs58342093 | 1.00[EUR][1000 genomes] |
rs58496929 | 1.00[EUR][1000 genomes] |
rs58719180 | 1.00[EUR][1000 genomes] |
rs58832562 | 1.00[EUR][1000 genomes] |
rs59159114 | 1.00[EUR][1000 genomes] |
rs59164943 | 1.00[EUR][1000 genomes] |
rs60082699 | 1.00[EUR][1000 genomes] |
rs60158422 | 1.00[EUR][1000 genomes] |
rs60382030 | 0.86[EUR][1000 genomes] |
rs60592123 | 1.00[EUR][1000 genomes] |
rs60662432 | 1.00[EUR][1000 genomes] |
rs60775964 | 1.00[EUR][1000 genomes] |
rs61032008 | 1.00[EUR][1000 genomes] |
rs61210391 | 1.00[EUR][1000 genomes] |
rs61341819 | 1.00[EUR][1000 genomes] |
rs61411334 | 1.00[EUR][1000 genomes] |
rs61412637 | 1.00[EUR][1000 genomes] |
rs6468326 | 1.00[EUR][1000 genomes] |
rs6468327 | 1.00[EUR][1000 genomes] |
rs6468328 | 1.00[EUR][1000 genomes] |
rs6468329 | 1.00[EUR][1000 genomes] |
rs6468330 | 1.00[EUR][1000 genomes] |
rs6468331 | 1.00[EUR][1000 genomes] |
rs6468332 | 1.00[EUR][1000 genomes] |
rs6468333 | 1.00[EUR][1000 genomes] |
rs6468335 | 1.00[EUR][1000 genomes] |
rs6468336 | 1.00[EUR][1000 genomes] |
rs6468337 | 1.00[EUR][1000 genomes] |
rs6468339 | 1.00[EUR][1000 genomes] |
rs6468340 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6986225 | 1.00[EUR][1000 genomes] |
rs6986608 | 0.84[AMR][1000 genomes] |
rs6987006 | 0.84[AMR][1000 genomes] |
rs6987079 | 1.00[EUR][1000 genomes] |
rs6989133 | 1.00[EUR][1000 genomes] |
rs6989852 | 1.00[EUR][1000 genomes] |
rs6997156 | 1.00[EUR][1000 genomes] |
rs6998018 | 1.00[EUR][1000 genomes] |
rs6998842 | 1.00[EUR][1000 genomes] |
rs6999180 | 1.00[EUR][1000 genomes] |
rs7000366 | 1.00[EUR][1000 genomes] |
rs7005043 | 1.00[EUR][1000 genomes] |
rs7005046 | 1.00[EUR][1000 genomes] |
rs7007054 | 1.00[EUR][1000 genomes] |
rs7007647 | 1.00[EUR][1000 genomes] |
rs7009537 | 1.00[EUR][1000 genomes] |
rs7011539 | 1.00[EUR][1000 genomes] |
rs7011742 | 1.00[EUR][1000 genomes] |
rs7013001 | 1.00[EUR][1000 genomes] |
rs7013512 | 1.00[EUR][1000 genomes] |
rs7014109 | 1.00[EUR][1000 genomes] |
rs7016435 | 1.00[EUR][1000 genomes] |
rs7017863 | 1.00[EUR][1000 genomes] |
rs73576273 | 1.00[EUR][1000 genomes] |
rs73578213 | 1.00[EUR][1000 genomes] |
rs73578240 | 1.00[EUR][1000 genomes] |
rs73578254 | 1.00[EUR][1000 genomes] |
rs73578258 | 1.00[EUR][1000 genomes] |
rs73578281 | 1.00[EUR][1000 genomes] |
rs73578300 | 1.00[EUR][1000 genomes] |
rs73580204 | 1.00[EUR][1000 genomes] |
rs73580209 | 1.00[EUR][1000 genomes] |
rs73580211 | 1.00[EUR][1000 genomes] |
rs73580235 | 1.00[EUR][1000 genomes] |
rs73582209 | 1.00[EUR][1000 genomes] |
rs73582284 | 1.00[EUR][1000 genomes] |
rs73583051 | 1.00[EUR][1000 genomes] |
rs73586703 | 1.00[EUR][1000 genomes] |
rs73586731 | 1.00[EUR][1000 genomes] |
rs7815881 | 1.00[EUR][1000 genomes] |
rs7818053 | 1.00[EUR][1000 genomes] |
rs7818374 | 1.00[EUR][1000 genomes] |
rs7818709 | 1.00[EUR][1000 genomes] |
rs7821825 | 1.00[EUR][1000 genomes] |
rs7822431 | 1.00[EUR][1000 genomes] |
rs7824105 | 1.00[EUR][1000 genomes] |
rs7830643 | 1.00[EUR][1000 genomes] |
rs7830649 | 1.00[EUR][1000 genomes] |
rs7833421 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7836141 | 1.00[EUR][1000 genomes] |
rs7838726 | 1.00[EUR][1000 genomes] |
rs7839379 | 1.00[EUR][1000 genomes] |
rs7840766 | 1.00[EUR][1000 genomes] |
rs7841232 | 1.00[EUR][1000 genomes] |
rs7842132 | 1.00[EUR][1000 genomes] |
rs7843323 | 1.00[EUR][1000 genomes] |
rs7844702 | 1.00[EUR][1000 genomes] |
rs7846639 | 1.00[EUR][1000 genomes] |
rs934649 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs9656774 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533420 | chr8:35358115-36227536 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1032540 | chr8:35565491-35949132 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1024552 | chr8:35655964-36210907 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv539548 | chr8:35655964-36210907 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
5 | esv13422 | chr8:35666429-35680427 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |