Variant report

Variant	rs55860965
Chromosome Location	chr8:35609944-35609945
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10503983	1.00[EUR][1000 genomes]
rs11984500	1.00[EUR][1000 genomes]
rs11985711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986538	1.00[EUR][1000 genomes]
rs11987769	1.00[EUR][1000 genomes]
rs11988094	1.00[EUR][1000 genomes]
rs11989128	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11989578	1.00[EUR][1000 genomes]
rs11992482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992489	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992734	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11993299	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994299	1.00[EUR][1000 genomes]
rs11994324	1.00[EUR][1000 genomes]
rs11994757	1.00[EUR][1000 genomes]
rs11995446	1.00[EUR][1000 genomes]
rs11995471	1.00[EUR][1000 genomes]
rs11996057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1436611	1.00[EUR][1000 genomes]
rs1436614	1.00[EUR][1000 genomes]
rs1436615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884268	1.00[EUR][1000 genomes]
rs16884297	1.00[EUR][1000 genomes]
rs16884299	1.00[EUR][1000 genomes]
rs16884300	1.00[EUR][1000 genomes]
rs16884301	1.00[EUR][1000 genomes]
rs16884304	1.00[EUR][1000 genomes]
rs16884305	1.00[EUR][1000 genomes]
rs16884340	1.00[EUR][1000 genomes]
rs16884343	1.00[EUR][1000 genomes]
rs16884349	1.00[EUR][1000 genomes]
rs16884352	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884360	1.00[EUR][1000 genomes]
rs16884367	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884371	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884401	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884403	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884404	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884405	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884409	1.00[EUR][1000 genomes]
rs16884412	0.83[EUR][1000 genomes]
rs16884418	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884431	1.00[EUR][1000 genomes]
rs16884441	1.00[EUR][1000 genomes]
rs16884444	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884452	1.00[EUR][1000 genomes]
rs16884454	1.00[EUR][1000 genomes]
rs16884457	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884467	1.00[EUR][1000 genomes]
rs16884502	1.00[EUR][1000 genomes]
rs2043659	1.00[EUR][1000 genomes]
rs28459520	1.00[EUR][1000 genomes]
rs4295659	1.00[EUR][1000 genomes]
rs4538874	1.00[EUR][1000 genomes]
rs55666865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55678313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55771007	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55813330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56085711	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56106393	1.00[EUR][1000 genomes]
rs56173644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56280904	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57687144	1.00[EUR][1000 genomes]
rs57917672	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58260432	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58262186	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58342093	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58496929	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58719180	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58832562	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59159114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59164943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60082699	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60158422	1.00[EUR][1000 genomes]
rs60382030	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60592123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60662432	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60775964	1.00[EUR][1000 genomes]
rs61032008	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61210391	1.00[EUR][1000 genomes]
rs61341819	1.00[EUR][1000 genomes]
rs61411334	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61412637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468326	1.00[EUR][1000 genomes]
rs6468327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468333	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468335	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468336	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468337	1.00[EUR][1000 genomes]
rs6468339	1.00[EUR][1000 genomes]
rs6468340	1.00[EUR][1000 genomes]
rs6986225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987079	1.00[EUR][1000 genomes]
rs6989133	1.00[EUR][1000 genomes]
rs6989852	1.00[EUR][1000 genomes]
rs6997156	1.00[EUR][1000 genomes]
rs6998018	1.00[EUR][1000 genomes]
rs6998842	1.00[EUR][1000 genomes]
rs6999180	1.00[EUR][1000 genomes]
rs7000366	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7005043	1.00[EUR][1000 genomes]
rs7005046	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7007054	1.00[EUR][1000 genomes]
rs7007647	1.00[EUR][1000 genomes]
rs7009537	1.00[EUR][1000 genomes]
rs7011539	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7011742	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7013001	1.00[EUR][1000 genomes]
rs7013512	1.00[EUR][1000 genomes]
rs7014109	1.00[EUR][1000 genomes]
rs7016435	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7017863	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578213	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578240	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578254	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578258	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578281	1.00[EUR][1000 genomes]
rs73578300	1.00[EUR][1000 genomes]
rs73580204	1.00[EUR][1000 genomes]
rs73580209	1.00[EUR][1000 genomes]
rs73580211	1.00[EUR][1000 genomes]
rs73580235	1.00[EUR][1000 genomes]
rs73582209	1.00[EUR][1000 genomes]
rs73582284	1.00[EUR][1000 genomes]
rs73583051	1.00[EUR][1000 genomes]
rs73586703	1.00[EUR][1000 genomes]
rs73586731	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815881	1.00[EUR][1000 genomes]
rs7818053	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818374	1.00[EUR][1000 genomes]
rs7818709	1.00[EUR][1000 genomes]
rs7821825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7824105	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7830643	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7830649	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833421	1.00[EUR][1000 genomes]
rs7836141	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838726	1.00[EUR][1000 genomes]
rs7839379	1.00[EUR][1000 genomes]
rs7840766	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841232	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842132	1.00[EUR][1000 genomes]
rs7843323	1.00[EUR][1000 genomes]
rs7844702	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7846639	1.00[EUR][1000 genomes]
rs934649	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2754662	chr8:35558658-35648958	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35576000-35631600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:35582000-35640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:35591600-35611800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:35591800-35611200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:35591800-35611800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:35597800-35612200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:35598800-35611400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr8:35598800-35611800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:35603200-35624800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:35606600-35610400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:35607400-35624400	Weak transcription	Fetal Brain Female	brain
12	chr8:35608000-35610000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:35608000-35610400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:35608000-35610600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:35608800-35610000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:35608800-35610400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:35608800-35611000	Enhancers	Fetal Heart	heart
18	chr8:35609000-35610200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr8:35609000-35610400	Enhancers	NH-A	brain
20	chr8:35609000-35610600	Enhancers	Brain Angular Gyrus	brain
21	chr8:35609200-35610000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:35609200-35610000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr8:35609200-35610000	Enhancers	Ovary	ovary
24	chr8:35609200-35610200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr8:35609200-35610800	Enhancers	Fetal Lung	lung
26	chr8:35609400-35610200	Enhancers	HSMMtube	muscle
27	chr8:35609400-35610600	Enhancers	Fetal Kidney	kidney
28	chr8:35609600-35610200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr8:35609600-35610400	Enhancers	Rectal Smooth Muscle	rectum
30	chr8:35609800-35610200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:35609800-35610200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr8:35609800-35610200	Enhancers	Brain Cingulate Gyrus	brain
33	chr8:35609800-35610200	Enhancers	Brain Hippocampus Middle	brain
34	chr8:35609800-35610200	Enhancers	Fetal Intestine Small	intestine
35	chr8:35609800-35610200	Enhancers	Fetal Stomach	stomach
36	chr8:35609800-35610200	Enhancers	Right Atrium	heart
37	chr8:35609800-35610200	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr8:35609800-35610400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr8:35609800-35610400	Enhancers	Colon Smooth Muscle	Colon
40	chr8:35609800-35611000	Enhancers	Fetal Muscle Leg	muscle
41	chr8:35609800-35616600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr8:35609800-35622400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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