Variant report

Variant	rs16884444
Chromosome Location	chr8:35648980-35648981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:35648920-35649070	AG04449	skin:	n/a	n/a

Variant related genes	Relation type
ENSG00000233863	TF binding region

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10503983	1.00[EUR][1000 genomes]
rs11984500	1.00[EUR][1000 genomes]
rs11985711	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986538	1.00[EUR][1000 genomes]
rs11987769	1.00[EUR][1000 genomes]
rs11988094	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11989128	1.00[EUR][1000 genomes]
rs11989578	1.00[EUR][1000 genomes]
rs11992482	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992489	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992734	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992799	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11993299	1.00[EUR][1000 genomes]
rs11994299	1.00[EUR][1000 genomes]
rs11994324	1.00[EUR][1000 genomes]
rs11994757	1.00[EUR][1000 genomes]
rs11995446	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11995471	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11996057	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1436611	1.00[EUR][1000 genomes]
rs1436614	1.00[EUR][1000 genomes]
rs1436615	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884268	1.00[EUR][1000 genomes]
rs16884297	1.00[EUR][1000 genomes]
rs16884299	1.00[EUR][1000 genomes]
rs16884300	1.00[EUR][1000 genomes]
rs16884301	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16884304	1.00[EUR][1000 genomes]
rs16884305	1.00[EUR][1000 genomes]
rs16884340	1.00[EUR][1000 genomes]
rs16884343	1.00[EUR][1000 genomes]
rs16884349	1.00[EUR][1000 genomes]
rs16884352	1.00[EUR][1000 genomes]
rs16884360	1.00[EUR][1000 genomes]
rs16884367	1.00[EUR][1000 genomes]
rs16884371	1.00[EUR][1000 genomes]
rs16884375	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884401	1.00[EUR][1000 genomes]
rs16884403	1.00[EUR][1000 genomes]
rs16884404	1.00[EUR][1000 genomes]
rs16884405	1.00[EUR][1000 genomes]
rs16884409	1.00[EUR][1000 genomes]
rs16884412	0.83[EUR][1000 genomes]
rs16884418	1.00[EUR][1000 genomes]
rs16884431	1.00[EUR][1000 genomes]
rs16884441	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16884452	1.00[EUR][1000 genomes]
rs16884454	1.00[EUR][1000 genomes]
rs16884457	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884467	1.00[EUR][1000 genomes]
rs16884502	1.00[EUR][1000 genomes]
rs2043659	1.00[EUR][1000 genomes]
rs28459520	1.00[EUR][1000 genomes]
rs4295659	1.00[EUR][1000 genomes]
rs4538874	1.00[EUR][1000 genomes]
rs55666865	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55678313	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55771007	1.00[EUR][1000 genomes]
rs55813330	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55860965	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56085711	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56106393	1.00[EUR][1000 genomes]
rs56173644	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56280904	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57687144	1.00[EUR][1000 genomes]
rs57917672	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58260432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58262186	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58342093	1.00[EUR][1000 genomes]
rs58496929	1.00[EUR][1000 genomes]
rs58719180	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58832562	1.00[EUR][1000 genomes]
rs59159114	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59164943	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59249141	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs60082699	1.00[EUR][1000 genomes]
rs60158422	1.00[EUR][1000 genomes]
rs60382030	0.86[EUR][1000 genomes]
rs60592123	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60662432	1.00[EUR][1000 genomes]
rs60775964	1.00[EUR][1000 genomes]
rs61032008	1.00[EUR][1000 genomes]
rs61210391	1.00[EUR][1000 genomes]
rs61341819	1.00[EUR][1000 genomes]
rs61411334	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61412637	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468326	1.00[EUR][1000 genomes]
rs6468327	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468328	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468329	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468330	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468331	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468332	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468333	1.00[EUR][1000 genomes]
rs6468335	1.00[EUR][1000 genomes]
rs6468336	1.00[EUR][1000 genomes]
rs6468337	1.00[EUR][1000 genomes]
rs6468339	1.00[EUR][1000 genomes]
rs6468340	1.00[EUR][1000 genomes]
rs6986225	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987079	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6989133	1.00[EUR][1000 genomes]
rs6989852	1.00[EUR][1000 genomes]
rs6997156	1.00[EUR][1000 genomes]
rs6998018	1.00[EUR][1000 genomes]
rs6998842	1.00[EUR][1000 genomes]
rs6999180	1.00[EUR][1000 genomes]
rs7000366	1.00[EUR][1000 genomes]
rs7005043	1.00[EUR][1000 genomes]
rs7005046	1.00[EUR][1000 genomes]
rs7007054	1.00[EUR][1000 genomes]
rs7007647	1.00[EUR][1000 genomes]
rs7009537	1.00[EUR][1000 genomes]
rs7011539	1.00[EUR][1000 genomes]
rs7011742	1.00[EUR][1000 genomes]
rs7013001	1.00[EUR][1000 genomes]
rs7013512	1.00[EUR][1000 genomes]
rs7014109	1.00[EUR][1000 genomes]
rs7016435	1.00[EUR][1000 genomes]
rs7017863	1.00[EUR][1000 genomes]
rs73576273	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578213	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578240	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578254	1.00[EUR][1000 genomes]
rs73578258	1.00[EUR][1000 genomes]
rs73578281	1.00[EUR][1000 genomes]
rs73578300	1.00[EUR][1000 genomes]
rs73580204	1.00[EUR][1000 genomes]
rs73580209	1.00[EUR][1000 genomes]
rs73580211	1.00[EUR][1000 genomes]
rs73580235	1.00[EUR][1000 genomes]
rs73582209	1.00[EUR][1000 genomes]
rs73582284	1.00[EUR][1000 genomes]
rs73583051	1.00[EUR][1000 genomes]
rs73586703	1.00[EUR][1000 genomes]
rs73586731	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815881	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818053	1.00[EUR][1000 genomes]
rs7818374	1.00[EUR][1000 genomes]
rs7818709	1.00[EUR][1000 genomes]
rs7821825	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822431	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7824105	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7830643	1.00[EUR][1000 genomes]
rs7830649	1.00[EUR][1000 genomes]
rs7833421	1.00[EUR][1000 genomes]
rs7836141	1.00[EUR][1000 genomes]
rs7838726	1.00[EUR][1000 genomes]
rs7839379	1.00[EUR][1000 genomes]
rs7840766	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841232	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842132	1.00[EUR][1000 genomes]
rs7843323	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7844702	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7846639	1.00[EUR][1000 genomes]
rs934649	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35630200-35653400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:35633000-35650400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:35633000-35650800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:35638000-35651600	Weak transcription	Fetal Brain Female	brain
5	chr8:35641000-35653200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:35641000-35656000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:35641800-35650600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:35647600-35649000	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:35647800-35649200	Strong transcription	H9 Cell Line	embryonic stem cell
10	chr8:35647800-35649200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:35648200-35649400	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:35648400-35649000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:35648600-35650600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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