Variant report

Variant	rs6987006
Chromosome Location	chr8:35803681-35803682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4295659	0.84[AMR][1000 genomes]
rs56217325	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58612139	1.00[EUR][1000 genomes]
rs58617899	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59058899	0.81[ASN][1000 genomes]
rs60361673	0.81[ASN][1000 genomes]
rs6468340	0.80[AMR][1000 genomes]
rs6468343	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6986608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6989878	1.00[EUR][1000 genomes]
rs6990328	1.00[EUR][1000 genomes]
rs6995733	1.00[EUR][1000 genomes]
rs73673947	0.81[ASN][1000 genomes]
rs7820595	1.00[EUR][1000 genomes]
rs934649	0.80[CHB][hapmap];0.91[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv831286	chr8:35802388-35950586	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35801000-35804200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr8:35801200-35803800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:35801200-35805000	Enhancers	HSMM	muscle
4	chr8:35801600-35803800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:35801800-35803800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:35801800-35803800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:35801800-35803800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:35801800-35804600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:35802000-35803800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:35802000-35803800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:35802000-35803800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:35802000-35803800	Enhancers	HSMMtube	muscle
13	chr8:35802200-35803800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:35802200-35806800	Weak transcription	Brain Anterior Caudate	brain
15	chr8:35802400-35803800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:35802400-35804400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:35803200-35803800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:35803200-35806200	Weak transcription	Brain Substantia Nigra	brain
19	chr8:35803400-35803800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:35803600-35803800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr8:35803600-35803800	Enhancers	Brain Cingulate Gyrus	brain
22	chr8:35803600-35803800	Enhancers	Osteobl	bone
23	chr8:35803600-35804400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:35803600-35806200	Weak transcription	Brain Hippocampus Middle	brain

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