Variant report

Variant	rs73673947
Chromosome Location	chr8:35763917-35763918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10106027	0.88[ASN][1000 genomes]
rs12681657	0.94[ASN][1000 genomes]
rs28693720	0.88[ASN][1000 genomes]
rs56217325	0.85[ASN][1000 genomes]
rs58617899	0.91[ASN][1000 genomes]
rs6468343	0.91[ASN][1000 genomes]
rs6986608	0.85[ASN][1000 genomes]
rs6987006	0.81[ASN][1000 genomes]
rs934649	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2761421	chr8:35744018-35766773	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35760400-35764000	Weak transcription	Fetal Intestine Large	intestine
2	chr8:35762000-35764600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:35762400-35764400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:35762800-35766200	Weak transcription	Primary B cells from cord blood	blood
5	chr8:35762800-35766400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr8:35763000-35764400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:35763200-35770200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:35763400-35764000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:35763800-35764000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:35763800-35764000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:35763800-35764200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:35763800-35764200	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr8:35763800-35764400	Enhancers	Fetal Heart	heart
14	chr8:35763800-35764600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:35763800-35764600	Enhancers	Brain Germinal Matrix	brain
16	chr8:35763800-35764600	Enhancers	Fetal Muscle Leg	muscle
17	chr8:35763800-35764800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:35763800-35764800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr8:35763800-35764800	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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