Variant report

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10095118	0.91[ASN][1000 genomes]
rs10101908	0.81[ASN][1000 genomes]
rs11997398	0.85[ASN][1000 genomes]
rs12681657	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28432136	0.81[ASN][1000 genomes]
rs28693720	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4295659	0.91[ASN][1000 genomes]
rs58617899	0.80[ASN][1000 genomes]
rs6468340	0.81[ASN][1000 genomes]
rs6468343	0.80[ASN][1000 genomes]
rs73673947	0.88[ASN][1000 genomes]
rs934649	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9656774	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35718800-35721600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr8:35719000-35722000	Enhancers	HSMMtube	muscle
3	chr8:35719400-35721600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:35719600-35721600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:35719800-35722000	Enhancers	Fetal Muscle Leg	muscle
6	chr8:35719800-35724800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:35720200-35723800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:35720200-35724600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:35720200-35729400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:35720400-35724000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:35720400-35724800	Weak transcription	Fetal Stomach	stomach
12	chr8:35720800-35721800	Enhancers	Fetal Brain Female	brain
13	chr8:35720800-35722000	Enhancers	Brain Germinal Matrix	brain
14	chr8:35720800-35723200	Enhancers	Fetal Brain Male	brain
15	chr8:35721000-35721800	Enhancers	Fetal Muscle Trunk	muscle
16	chr8:35721000-35725200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:35721200-35724200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:35721200-35724600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:35721200-35725200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:35721400-35725400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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