Variant report

Variant	rs10101908
Chromosome Location	chr8:35635512-35635513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10095118	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10106027	0.81[ASN][1000 genomes]
rs10108043	0.93[ASN][1000 genomes]
rs10112124	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11997398	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12681866	0.92[ASN][1000 genomes]
rs1347609	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28432136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28459520	0.94[ASN][1000 genomes]
rs28693720	0.81[ASN][1000 genomes]
rs28699490	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4295659	0.88[ASN][1000 genomes]
rs4538874	0.94[ASN][1000 genomes]
rs6468340	1.00[ASN][1000 genomes]
rs7833421	0.93[ASN][1000 genomes]
rs934649	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9656774	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2754662	chr8:35558658-35648958	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35582000-35640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:35619200-35640400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:35619400-35636800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:35627000-35640800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:35630200-35653400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:35632200-35645400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:35632400-35637600	Weak transcription	Fetal Brain Female	brain
8	chr8:35633000-35647800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:35633000-35650400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:35633000-35650800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:35633800-35640400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:35634200-35647800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:35634800-35636000	Enhancers	Fetal Stomach	stomach
14	chr8:35634800-35636400	Enhancers	Fetal Brain Male	brain
15	chr8:35634800-35637000	Enhancers	Fetal Lung	lung
16	chr8:35635200-35645200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:35635400-35636200	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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