Variant report

Variant	rs6986608
Chromosome Location	chr8:35797290-35797291
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12681657	0.80[ASN][1000 genomes]
rs4295659	0.84[AMR][1000 genomes]
rs56217325	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58612139	1.00[EUR][1000 genomes]
rs58617899	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6468340	0.80[AMR][1000 genomes]
rs6468343	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6987006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6989878	1.00[EUR][1000 genomes]
rs6990328	1.00[EUR][1000 genomes]
rs6995733	1.00[EUR][1000 genomes]
rs73673947	0.85[ASN][1000 genomes]
rs7820595	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35796800-35797600	Enhancers	Colon Smooth Muscle	Colon
2	chr8:35796800-35798200	Enhancers	Brain Germinal Matrix	brain
3	chr8:35796800-35798400	Enhancers	Rectal Smooth Muscle	rectum
4	chr8:35796800-35799200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:35797000-35797400	Enhancers	Brain Hippocampus Middle	brain
6	chr8:35797000-35798600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:35797000-35798800	Enhancers	Brain Cingulate Gyrus	brain
8	chr8:35797200-35797400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:35797200-35798000	Enhancers	Adipose Nuclei	Adipose
10	chr8:35797200-35798000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr8:35797200-35798000	Enhancers	Right Atrium	heart
12	chr8:35797200-35798200	Enhancers	Brain Anterior Caudate	brain
13	chr8:35797200-35798400	Enhancers	Brain Angular Gyrus	brain
14	chr8:35797200-35800000	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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