Variant report

Variant	rs6989878
Chromosome Location	chr8:35738065-35738066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11988094	0.90[GIH][hapmap]
rs16884301	0.90[GIH][hapmap]
rs16884441	0.90[GIH][hapmap]
rs16884444	0.90[GIH][hapmap]
rs56106393	0.82[AMR][1000 genomes]
rs56217325	1.00[EUR][1000 genomes]
rs57687144	0.83[AMR][1000 genomes]
rs58612139	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58617899	1.00[EUR][1000 genomes]
rs6468343	1.00[EUR][1000 genomes]
rs6986608	1.00[EUR][1000 genomes]
rs6987006	1.00[EUR][1000 genomes]
rs6987079	0.90[GIH][hapmap]
rs6990328	1.00[EUR][1000 genomes]
rs6995733	1.00[EUR][1000 genomes]
rs7820595	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35736600-35739200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:35736800-35738600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:35736800-35739200	Enhancers	Dnd41	blood
4	chr8:35737200-35738800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:35737600-35738400	Enhancers	Primary hematopoietic stem cells	blood
6	chr8:35737800-35739000	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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