Variant report

Variant	rs10110
Chromosome Location	chr9:140449582-140449583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:140449488-140450360	GM12892	blood:	n/a	n/a
2	POLR2A	chr9:140449495-140450378	K562	blood:	n/a	n/a
3	POLR2A	chr9:140449571-140449627	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr9:140448951-140449844	K562	blood:	n/a	n/a
5	POLR2A	chr9:140449580-140450012	GM12892	blood:	n/a	n/a
6	POLR2A	chr9:140446225-140450742	K562	blood:	n/a	n/a
7	POLR2A	chr9:140449424-140450081	HepG2	liver:	n/a	n/a
8	POLR2A	chr9:140449544-140449729	HepG2	liver:	n/a	n/a
9	POLR2A	chr9:140449361-140450377	K562	blood:	n/a	n/a
10	POLR2A	chr9:140449494-140449991	HL-60	blood:	n/a	n/a
11	POLR2A	chr9:140449419-140449904	K562	blood:	n/a	n/a
12	POLR2A	chr9:140449367-140450311	GM12878	blood:	n/a	n/a
13	POLR2A	chr9:140449508-140449967	GM12878	blood:	n/a	n/a
14	POLR2A	chr9:140449408-140449902	H1-hESC	embryonic stem cell:	n/a	n/a
15	BRCA1	chr9:140449577-140449680	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr9:140449409-140449927	GM12891	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:140445810..140448101-chr9:140449501..140452314,4	K562	blood:
2	chr9:140447442..140450048-chr9:140483763..140485400,2	MCF-7	breast:
3	chr9:140443477..140447796-chr9:140449022..140451330,7	MCF-7	breast:
4	chr9:140449572..140452200-chr9:140506963..140508845,2	MCF-7	breast:
5	chr9:140446439..140449718-chr9:140469897..140473461,3	K562	blood:
6	chr9:140193137..140197903-chr9:140443164..140449787,14	MCF-7	breast:
7	chr9:140448023..140449747-chr9:140465385..140467974,2	K562	blood:
8	chr9:140448822..140451446-chr9:140457626..140459240,2	K562	blood:
9	chr9:140447426..140450339-chr9:140645965..140648548,2	K562	blood:

No data

Variant related genes	Relation type
PNPLA7	TF binding region
ENSG00000130653	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000148399	Chromatin interaction
ENSG00000197070	Chromatin interaction
ENSG00000165724	Chromatin interaction
ENSG00000182154	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10120250	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1045777	0.83[CEU][hapmap];0.94[CHD][hapmap];0.96[MEX][hapmap]
rs10732688	0.82[CHB][hapmap]
rs10780179	0.82[CHB][hapmap]
rs10780180	0.83[CEU][hapmap]
rs10780183	0.82[CHB][hapmap]
rs10780184	0.82[CHB][hapmap]
rs10867050	0.82[CHB][hapmap]
rs10867051	0.82[CHB][hapmap]
rs1105221	1.00[ASW][hapmap];0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11137132	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11137135	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11137136	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11137140	0.82[CHB][hapmap]
rs11137141	0.82[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs11137142	0.83[ASN][1000 genomes]
rs11137144	0.83[ASN][1000 genomes]
rs11137145	0.81[ASN][1000 genomes]
rs11137148	0.85[ASN][1000 genomes]
rs11137158	0.82[CHB][hapmap]
rs11137163	0.82[CHB][hapmap];0.89[CHD][hapmap]
rs11137167	0.82[CHB][hapmap];0.94[CHD][hapmap]
rs11137169	0.82[CHB][hapmap];0.94[CHD][hapmap]
rs12553790	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[GIH][hapmap];0.87[LWK][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683290	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13296028	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs17496354	0.82[CHB][hapmap]
rs1776773	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776774	0.92[ASN][1000 genomes]
rs1776776	0.82[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.85[ASN][1000 genomes]
rs1891628	1.00[ASW][hapmap];0.94[CEU][hapmap];0.82[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2094623	0.94[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2257839	0.94[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2282465	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297004	0.91[ASW][hapmap];0.94[CEU][hapmap];0.82[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.80[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2297005	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2297006	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2488595	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2501556	0.82[CHB][hapmap]
rs2501559	0.82[CHB][hapmap]
rs2501567	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs2501568	0.82[CHB][hapmap]
rs2987618	0.82[CHB][hapmap];0.94[CHD][hapmap];0.88[MEX][hapmap]
rs2987621	0.82[CHB][hapmap];0.94[CHD][hapmap];0.84[MEX][hapmap]
rs3763610	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3849856	0.82[CHB][hapmap]
rs3895387	0.82[CHB][hapmap]
rs4246177	0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4962227	0.82[CHB][hapmap];0.94[CHD][hapmap];0.84[MEX][hapmap]
rs4962241	0.81[ASN][1000 genomes]
rs4962246	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4962247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4979657	0.82[CHB][hapmap]
rs67089520	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67789600	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7020339	0.81[ASN][1000 genomes]
rs7024179	0.82[CHB][hapmap]
rs7043932	0.82[CHB][hapmap];0.94[CHD][hapmap];0.84[MEX][hapmap]
rs7389975	0.81[ASN][1000 genomes]
rs7858572	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs821313	0.82[CHB][hapmap];0.94[CHD][hapmap];0.84[MEX][hapmap]
rs821317	0.81[ASN][1000 genomes]
rs863701	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs864747	0.81[ASN][1000 genomes]
rs9410034	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs950078	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs975978	0.82[CHB][hapmap]
rs9774907	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9777268	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
3	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
4	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
6	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
7	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
8	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
9	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
10	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
11	nsv531602	chr9:140240417-140535223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	diseases
12	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
13	nsv1035524	chr9:140251014-140751633	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
14	nsv1053628	chr9:140260666-141005637	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
15	nsv534215	chr9:140286134-141008915	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	n/a
16	nsv1035388	chr9:140306746-140654768	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	n/a
17	nsv831762	chr9:140338779-140514107	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	n/a
18	nsv1039672	chr9:140343466-140707505	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
19	nsv540358	chr9:140343466-140707505	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
20	nsv1041512	chr9:140350404-140612859	Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
21	nsv540359	chr9:140350404-140612859	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
22	nsv616022	chr9:140372570-140523429	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	n/a
23	nsv616023	chr9:140372570-140602887	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
24	nsv531603	chr9:140378700-140590977	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
25	nsv531665	chr9:140378700-141073897	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	n/a
26	nsv894663	chr9:140382705-140454791	Weak transcription Strong transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
27	nsv540362	chr9:140401645-140452700	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	n/a
28	nsv868924	chr9:140407572-141053525	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	n/a
29	nsv1039933	chr9:140408112-141005637	Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
30	nsv531666	chr9:140409395-141015925	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
31	nsv616024	chr9:140414410-140536098	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	n/a
32	nsv831763	chr9:140439831-140614021	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	n/a
33	nsv894664	chr9:140442503-140454791	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	n/a
34	nsv540364	chr9:140447860-140514807	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	n/a

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs10110	LHX1	trans	parietal	SCAN
rs10110	EHMT1	cis	Whole Blood	GTEx
rs10110	C9orf37	cis	cerebellum	SCAN
rs10110	PNPLA7	cis	cerebellum	SCAN
rs10110	PNPLA7	cis	Esophagus Muscularis	GTEx
rs10110	WDR5	cis	parietal	SCAN
rs10110	ARRDC1	cis	cerebellum	SCAN
rs10110	ENTPD2	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140446800-140459800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:140447000-140449600	Weak transcription	Aorta	Aorta
3	chr9:140447000-140450400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:140447000-140464200	Weak transcription	Fetal Kidney	kidney
5	chr9:140447200-140449600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:140447200-140449600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:140447200-140449600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:140447200-140449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:140447200-140449600	Weak transcription	Brain Germinal Matrix	brain
10	chr9:140447200-140449600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:140447200-140449800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:140447200-140449800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr9:140447200-140449800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr9:140447200-140450800	Weak transcription	Fetal Lung	lung
15	chr9:140447200-140452600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:140447200-140458200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr9:140447200-140458200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:140447200-140459400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:140447200-140466400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:140447200-140470200	Weak transcription	Stomach Mucosa	stomach
21	chr9:140447200-140471800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr9:140447400-140449600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr9:140447400-140449600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:140447400-140449600	Weak transcription	Primary B cells from cord blood	blood
25	chr9:140447400-140449600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr9:140447400-140449600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr9:140447400-140449600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:140447400-140449600	Weak transcription	Colonic Mucosa	Colon
29	chr9:140447400-140449600	Weak transcription	Left Ventricle	heart
30	chr9:140447400-140449800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:140447400-140449800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:140447400-140450200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:140447400-140450200	Weak transcription	HSMM	muscle
34	chr9:140447400-140450200	Weak transcription	HUVEC	blood vessel
35	chr9:140447400-140450400	Weak transcription	Fetal Heart	heart
36	chr9:140447400-140450400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr9:140447400-140450600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:140447400-140450600	Strong transcription	Fetal Intestine Small	intestine
39	chr9:140447400-140450800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:140447400-140451200	Weak transcription	Fetal Brain Male	brain
41	chr9:140447400-140452000	Strong transcription	A549	lung
42	chr9:140447400-140452600	Weak transcription	NH-A	brain
43	chr9:140447400-140453400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:140447400-140453400	Strong transcription	Thymus	Thymus
45	chr9:140447400-140459800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:140447400-140466400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr9:140447400-140466800	Weak transcription	Psoas Muscle	Psoas
48	chr9:140447400-140469400	Weak transcription	Right Atrium	heart
49	chr9:140447400-140471800	Weak transcription	Small Intestine	intestine
50	chr9:140447600-140449800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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