Variant report

Variant	rs3763610
Chromosome Location	chr9:140473388-140473389
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:140473340-140473490	HCM	heart:	n/a	chr9:140473451-140473467
2	SIN3AK20	chr9:140473000-140473579	A549	lung:	n/a	n/a
3	CTCF	chr9:140473380-140473530	K562	blood:	n/a	chr9:140473451-140473467 chr9:140473501-140473514
4	POLR2A	chr9:140472948-140474025	Hela-S3	cervix:	n/a	n/a
5	MAX	chr9:140472835-140473986	HepG2	liver:	n/a	chr9:140473040-140473050
6	MYC	chr9:140473288-140473460	MCF-7	breast:	n/a	n/a
7	SMC3	chr9:140473067-140473662	Hela-S3	cervix:	n/a	n/a
8	EP300	chr9:140473211-140473602	GM12878	blood:	n/a	chr9:140473467-140473483
9	TAF1	chr9:140473193-140473668	PFSK-1	brain:	n/a	n/a
10	MAX	chr9:140472967-140473813	H1-hESC	embryonic stem cell:	n/a	chr9:140473040-140473050
11	GABPA	chr9:140472799-140474067	MCF-7	breast:	n/a	n/a
12	CTCF	chr9:140473300-140473450	A549	lung:	n/a	n/a
13	RXRA	chr9:140473245-140473576	GM12878	blood:	n/a	n/a
14	HCFC1	chr9:140472953-140473785	K562	blood:	n/a	n/a
15	BRCA1	chr9:140473338-140473564	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr9:140473380-140473530	HEEpiC	esophagus:	n/a	chr9:140473451-140473467 chr9:140473501-140473514
17	PBX3	chr9:140473268-140473441	GM12878	blood:	n/a	chr9:140473415-140473435
18	NFATC1	chr9:140472977-140473764	GM12878	blood:	n/a	n/a
19	POLR2A	chr9:140472936-140473681	GM19099	blood:	n/a	n/a
20	KAP1	chr9:140473088-140473623	U2OS	brain:	n/a	n/a
21	SIN3AK20	chr9:140473210-140473556	K562	blood:	n/a	n/a
22	PML	chr9:140472938-140473766	K562	blood:	n/a	n/a
23	CTCF	chr9:140473297-140473761	Fibrobl	skin:	n/a	chr9:140473451-140473467 chr9:140473501-140473514
24	MAFK	chr9:140473385-140473513	HepG2	liver:	n/a	n/a
25	CTCF	chr9:140473305-140473635	GM12878	blood:	n/a	chr9:140473451-140473467 chr9:140473501-140473514
26	CEBPD	chr9:140473041-140473590	K562	blood:	n/a	n/a
27	PBX3	chr9:140472913-140473815	A549	lung:	n/a	chr9:140473415-140473435
28	CTCF	chr9:140473327-140473598	GM13976	blood:	n/a	chr9:140473451-140473467 chr9:140473501-140473514
29	POLR2A	chr9:140472965-140473636	PANC-1	pancreas:	n/a	n/a
30	RAD21	chr9:140473194-140473638	HepG2	liver:	n/a	n/a
31	CREB1	chr9:140472902-140473672	A549	lung:	n/a	n/a
32	EP300	chr9:140472915-140473774	ECC-1	luminal epithelium:	n/a	chr9:140473467-140473483
33	POLR2A	chr9:140472939-140473765	GM12878	blood:	n/a	n/a
34	UBTF	chr9:140472938-140473677	K562	blood:	n/a	n/a
35	POLR2A	chr9:140473001-140473739	GM12892	blood:	n/a	n/a
36	CTCF	chr9:140473272-140473617	MCF-7	breast:	n/a	chr9:140473451-140473467 chr9:140473501-140473514
37	YY1	chr9:140472992-140473599	A549	lung:	n/a	chr9:140473039-140473053
38	SP4	chr9:140473194-140473707	H1-hESC	embryonic stem cell:	n/a	chr9:140473448-140473464
39	IRF1	chr9:140473120-140473638	K562	blood:	n/a	n/a
40	CTCF	chr9:140473360-140473510	GM12872	blood:	n/a	chr9:140473451-140473467
41	GABPA	chr9:140472965-140473729	GM12878	blood:	n/a	n/a
42	TAF1	chr9:140473054-140473657	K562	blood:	n/a	n/a
43	MAX	chr9:140472926-140473611	GM12878	blood:	n/a	chr9:140473040-140473050
44	NR2C2	chr9:140473152-140473590	GM12878	blood:	n/a	chr9:140473381-140473388
45	CTCF	chr9:140473096-140473918	K562	blood:	n/a	chr9:140473451-140473467 chr9:140473501-140473514
46	E2F4	chr9:140473018-140473636	MCF10A-Er-Src	breast:	n/a	chr9:140473036-140473046
47	POLR2A	chr9:140472849-140473662	MCF-7	breast:	n/a	n/a
48	POLR2A	chr9:140472938-140473863	HepG2	liver:	n/a	n/a
49	TBP	chr9:140473247-140473546	Hela-S3	cervix:	n/a	n/a
50	MYC	chr9:140472981-140473525	MCF10A-Er-Src	breast:	n/a	chr9:140473040-140473050

No.	Distal block	Cell Line	Cell type
1	chr9:140469278..140479132-chr9:140503165..140510984,27	MCF-7	breast:
2	chr9:140469283..140475998-chr9:140510945..140517022,12	K562	blood:
3	chr9:140470766..140479486-chr9:140497266..140502997,13	MCF-7	breast:
4	chr9:140470852..140475352-chr9:140511735..140515041,9	MCF-7	breast:
5	chr8:87520361..87521228-chr9:140472867..140473630,2	HCT-116	colon:
6	chr9:140444243..140447461-chr9:140473220..140477204,4	MCF-7	breast:
7	chr9:140470526..140476841-chr9:140479974..140487037,14	MCF-7	breast:
8	chr9:140135182..140137272-chr9:140472466..140474673,2	K562	blood:
9	chr9:140457953..140460745-chr9:140471921..140474546,2	K562	blood:
10	chr9:140444557..140448587-chr9:140470804..140473699,6	MCF-7	breast:
11	chr9:140473011..140477060-chr9:140511720..140517022,6	K562	blood:
12	chr9:140471797..140473910-chr9:140767835..140770122,2	K562	blood:
13	chr9:140443274..140446260-chr9:140471876..140474598,3	K562	blood:
14	chr9:140470445..140476327-chr9:140498022..140503450,9	K562	blood:
15	chr9:140444420..140448721-chr9:140471876..140474832,3	K562	blood:

Variant related genes	Relation type
DPH7	TF binding region
ENSG00000130653	Chromatin interaction
ENSG00000182154	Chromatin interaction
ENSG00000176623	Chromatin interaction
ENSG00000165724	Chromatin interaction
ENSG00000148399	Chromatin interaction
ENSG00000203987	Chromatin interaction
ENSG00000203993	Chromatin interaction
ENSG00000181090	Chromatin interaction
ENSG00000197070	Chromatin interaction
ENSG00000188229	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10110	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10116052	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10120250	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1045777	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10867031	0.83[AMR][1000 genomes]
rs1105221	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11137132	0.98[ASN][1000 genomes]
rs11137135	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11137136	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11137141	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11137142	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11137144	0.82[ASN][1000 genomes]
rs11137148	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12553790	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12683290	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13291780	0.83[AMR][1000 genomes]
rs1776773	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1776774	0.94[ASN][1000 genomes]
rs1776776	0.88[ASN][1000 genomes]
rs1891628	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2094623	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2257839	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2282465	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297004	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2297005	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2297006	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2353078	0.80[AMR][1000 genomes]
rs2488595	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2501550	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4246177	0.84[ASN][1000 genomes]
rs4962241	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4962246	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4962247	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67089520	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67499662	0.80[AMR][1000 genomes]
rs67789600	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7020339	0.84[ASN][1000 genomes]
rs71510836	0.83[AMR][1000 genomes]
rs7389975	0.84[ASN][1000 genomes]
rs7858572	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8181211	0.80[AMR][1000 genomes]
rs821317	0.84[ASN][1000 genomes]
rs863701	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs864747	0.84[ASN][1000 genomes]
rs9410034	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs950078	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9774907	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9777268	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
4	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
5	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
6	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
7	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
8	nsv531602	chr9:140240417-140535223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	diseases
9	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
10	nsv1035524	chr9:140251014-140751633	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
11	nsv1053628	chr9:140260666-141005637	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
12	nsv534215	chr9:140286134-141008915	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	n/a
13	nsv1035388	chr9:140306746-140654768	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	n/a
14	nsv831762	chr9:140338779-140514107	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	n/a
15	nsv1039672	chr9:140343466-140707505	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
16	nsv540358	chr9:140343466-140707505	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
17	nsv1041512	chr9:140350404-140612859	Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
18	nsv540359	chr9:140350404-140612859	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
19	nsv616022	chr9:140372570-140523429	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	n/a
20	nsv616023	chr9:140372570-140602887	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
21	nsv531603	chr9:140378700-140590977	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
22	nsv531665	chr9:140378700-141073897	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	n/a
23	nsv868924	chr9:140407572-141053525	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	n/a
24	nsv1039933	chr9:140408112-141005637	Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
25	nsv531666	chr9:140409395-141015925	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
26	nsv616024	chr9:140414410-140536098	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	n/a
27	nsv831763	chr9:140439831-140614021	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	n/a
28	nsv540364	chr9:140447860-140514807	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	n/a
29	esv3398333	chr9:140451462-140814795	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	n/a
30	nsv1052036	chr9:140452641-141018985	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
31	nsv540365	chr9:140452641-141018985	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
32	nsv949702	chr9:140466816-141027939	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	n/a
33	nsv531667	chr9:140468821-140936261	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
34	nsv894665	chr9:140469600-140523429	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	n/a
35	nsv894666	chr9:140470564-140518576	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3763610	PNPLA7	cis	Esophagus Muscularis	GTEx
rs3763610	EHMT1	cis	Whole Blood	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140471800-140474000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr9:140472000-140473600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr9:140472000-140473800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:140472000-140473800	Active TSS	Right Atrium	heart
5	chr9:140472200-140473600	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr9:140472200-140473600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:140472200-140473600	Active TSS	A549	lung
8	chr9:140472200-140473600	Active TSS	HSMM	muscle
9	chr9:140472200-140474000	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr9:140472200-140474000	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr9:140472200-140474200	Active TSS	HepG2	liver
12	chr9:140472400-140473400	Active TSS	Small Intestine	intestine
13	chr9:140472400-140473600	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr9:140472400-140473600	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr9:140472400-140473600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:140472400-140473600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:140472400-140473600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:140472400-140473600	Active TSS	HMEC	breast
19	chr9:140472400-140473600	Active TSS	NHDF-Ad	bronchial
20	chr9:140472400-140473600	Active TSS	NHEK	skin
21	chr9:140472400-140473600	Active TSS	NHLF	lung
22	chr9:140472400-140473800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:140472400-140473800	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr9:140472400-140473800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:140472400-140473800	Active TSS	Fetal Intestine Large	intestine
26	chr9:140472400-140473800	Active TSS	Fetal Kidney	kidney
27	chr9:140472400-140474000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr9:140472400-140474000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:140472400-140474000	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr9:140472400-140474200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:140472600-140473400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:140472600-140473400	Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr9:140472600-140473400	Active TSS	Muscle Satellite Cultured Cells	--
34	chr9:140472600-140473400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:140472600-140473600	Active TSS	H1 Cell Line	embryonic stem cell
36	chr9:140472600-140473600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:140472600-140473600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:140472600-140473600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:140472600-140473600	Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr9:140472600-140473600	Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr9:140472600-140473600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr9:140472600-140473600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:140472600-140473600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:140472600-140473600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:140472600-140473600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:140472600-140473600	Active TSS	Brain Hippocampus Middle	brain
47	chr9:140472600-140473600	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr9:140472600-140473600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr9:140472600-140473600	Active TSS	Brain Substantia Nigra	brain
50	chr9:140472600-140473600	Active TSS	Fetal Brain Male	brain

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