Variant report

Variant	rs10114801
Chromosome Location	chr9:108522741-108522742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10046878	0.83[AFR][1000 genomes]
rs10113972	0.83[AFR][1000 genomes]
rs10114130	1.00[AFR][1000 genomes]
rs10115662	0.83[AFR][1000 genomes]
rs10116005	0.96[AFR][1000 genomes]
rs10116197	1.00[AFR][1000 genomes]
rs10120813	0.83[AFR][1000 genomes]
rs10978207	0.83[AFR][1000 genomes]
rs10978217	1.00[AFR][1000 genomes]
rs11506758	0.88[AFR][1000 genomes]
rs11506829	0.96[AFR][1000 genomes]
rs12337252	0.96[AFR][1000 genomes]
rs12340503	1.00[AFR][1000 genomes]
rs12342079	0.92[AFR][1000 genomes]
rs12345515	1.00[AFR][1000 genomes]
rs12348005	1.00[AFR][1000 genomes]
rs12348603	0.96[AFR][1000 genomes]
rs12351889	0.86[AFR][1000 genomes]
rs16924936	0.96[AFR][1000 genomes]
rs28877915	0.96[AFR][1000 genomes]
rs57179817	0.96[AFR][1000 genomes]
rs60282712	0.84[AFR][1000 genomes]
rs7025764	0.83[AFR][1000 genomes]
rs7038466	1.00[AFR][1000 genomes]
rs7862382	0.96[AFR][1000 genomes]
rs7863153	0.92[AFR][1000 genomes]
rs7872036	0.96[AFR][1000 genomes]
rs7872193	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv982335	chr9:108520769-108531325	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108514000-108540000	Weak transcription	HSMMtube	muscle
2	chr9:108515200-108522800	Weak transcription	Left Ventricle	heart
3	chr9:108515200-108545000	Weak transcription	K562	blood
4	chr9:108515200-108560600	Weak transcription	Ovary	ovary
5	chr9:108515400-108523400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:108515400-108536800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:108515600-108538600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:108517800-108538400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:108520600-108522800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:108520600-108523200	Weak transcription	Pancreas	Pancrea
11	chr9:108520600-108535200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:108520600-108546400	Weak transcription	Fetal Intestine Small	intestine
13	chr9:108521000-108534200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:108521000-108538400	Weak transcription	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links