Variant report

Variant	rs7862382
Chromosome Location	chr9:108592453-108592454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108591234..108593447-chr9:108594377..108596340,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10046878	1.00[YRI][hapmap]
rs10114130	0.96[AFR][1000 genomes]
rs10114801	0.96[AFR][1000 genomes]
rs10116005	1.00[AFR][1000 genomes]
rs10116197	0.96[AFR][1000 genomes]
rs10120813	1.00[YRI][hapmap]
rs10120975	0.80[AFR][1000 genomes]
rs10978217	0.96[AFR][1000 genomes]
rs11506758	0.85[AFR][1000 genomes]
rs11506829	1.00[AFR][1000 genomes]
rs12337252	1.00[AFR][1000 genomes]
rs12338387	1.00[YRI][hapmap]
rs12340503	0.96[AFR][1000 genomes]
rs12342079	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12345515	0.85[YRI][hapmap];0.96[AFR][1000 genomes]
rs12348005	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs12348603	1.00[AFR][1000 genomes]
rs12351889	0.82[AFR][1000 genomes]
rs16924936	1.00[AFR][1000 genomes]
rs16924946	0.85[YRI][hapmap]
rs28877915	1.00[AFR][1000 genomes]
rs57179817	1.00[AFR][1000 genomes]
rs60282712	0.88[AFR][1000 genomes]
rs7038466	0.96[AFR][1000 genomes]
rs7863153	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7872036	1.00[AFR][1000 genomes]
rs7872193	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
5	nsv1036849	chr9:108582944-108651205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108591400-108594800	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links