Variant report

Variant	rs60282712
Chromosome Location	chr9:108444619-108444620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10114130	0.84[AFR][1000 genomes]
rs10114801	0.84[AFR][1000 genomes]
rs10116005	0.88[AFR][1000 genomes]
rs10116197	0.84[AFR][1000 genomes]
rs10120975	0.92[AFR][1000 genomes]
rs10978217	0.84[AFR][1000 genomes]
rs11506829	0.88[AFR][1000 genomes]
rs12337252	0.88[AFR][1000 genomes]
rs12340503	0.84[AFR][1000 genomes]
rs12345515	0.84[AFR][1000 genomes]
rs12348005	0.84[AFR][1000 genomes]
rs12348603	0.88[AFR][1000 genomes]
rs16924936	0.88[AFR][1000 genomes]
rs28877915	0.88[AFR][1000 genomes]
rs57179817	0.88[AFR][1000 genomes]
rs7038466	0.84[AFR][1000 genomes]
rs7862382	0.88[AFR][1000 genomes]
rs7872036	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
2	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108423600-108451600	Weak transcription	Psoas Muscle	Psoas
2	chr9:108441000-108445600	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:108441400-108445800	Weak transcription	HSMMtube	muscle
4	chr9:108442000-108450600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:108442200-108445600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:108444600-108445200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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