Variant report

Variant	rs57179817
Chromosome Location	chr9:108597621-108597622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10114130	0.96[AFR][1000 genomes]
rs10114801	0.96[AFR][1000 genomes]
rs10116005	1.00[AFR][1000 genomes]
rs10116197	0.96[AFR][1000 genomes]
rs10120975	0.80[AFR][1000 genomes]
rs10978217	0.96[AFR][1000 genomes]
rs11506758	0.85[AFR][1000 genomes]
rs11506829	1.00[AFR][1000 genomes]
rs12337252	1.00[AFR][1000 genomes]
rs12340503	0.96[AFR][1000 genomes]
rs12342079	0.89[AFR][1000 genomes]
rs12345515	0.96[AFR][1000 genomes]
rs12348005	0.96[AFR][1000 genomes]
rs12348603	1.00[AFR][1000 genomes]
rs12351889	0.82[AFR][1000 genomes]
rs16924936	1.00[AFR][1000 genomes]
rs28877915	1.00[AFR][1000 genomes]
rs60282712	0.88[AFR][1000 genomes]
rs7038466	0.96[AFR][1000 genomes]
rs7862382	1.00[AFR][1000 genomes]
rs7863153	0.89[AFR][1000 genomes]
rs7872036	1.00[AFR][1000 genomes]
rs7872193	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
5	nsv1036849	chr9:108582944-108651205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108596400-108599400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:108596600-108597800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:108596600-108597800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:108596600-108600000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:108597200-108598400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:108597400-108598400	Enhancers	Psoas Muscle	Psoas
7	chr9:108597400-108598600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:108597400-108598600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr9:108597400-108600000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:108597400-108600000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:108597600-108598000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:108597600-108598200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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