Variant report

Variant	rs10120975
Chromosome Location	chr9:108435194-108435195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10046878	0.87[YRI][hapmap]
rs10116005	0.80[AFR][1000 genomes]
rs10117369	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10120813	0.87[YRI][hapmap]
rs10978184	1.00[AMR][1000 genomes]
rs11506829	0.80[AFR][1000 genomes]
rs12337252	0.80[AFR][1000 genomes]
rs12338387	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12342079	0.87[YRI][hapmap]
rs12346758	1.00[AMR][1000 genomes]
rs12348005	0.87[YRI][hapmap]
rs12348603	0.80[AFR][1000 genomes]
rs1396751	1.00[AMR][1000 genomes]
rs1396752	1.00[AMR][1000 genomes]
rs16924936	0.80[AFR][1000 genomes]
rs28877915	0.80[AFR][1000 genomes]
rs57179817	0.80[AFR][1000 genomes]
rs60282712	0.92[AFR][1000 genomes]
rs71494547	1.00[AMR][1000 genomes]
rs73667013	1.00[AMR][1000 genomes]
rs7862382	0.80[AFR][1000 genomes]
rs7863153	0.87[YRI][hapmap]
rs7872036	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
2	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108423600-108451600	Weak transcription	Psoas Muscle	Psoas
2	chr9:108432800-108435200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:108433400-108436400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:108434400-108436200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:108434800-108435400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:108434800-108435400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:108434800-108436200	Enhancers	HepG2	liver
8	chr9:108434800-108436600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:108434800-108436600	Enhancers	K562	blood
10	chr9:108434800-108436800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:108434800-108437200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr9:108435000-108435200	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:108435000-108435400	Flanking Active TSS	Liver	Liver
14	chr9:108435000-108435400	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr9:108435000-108435600	Active TSS	Primary B cells from cord blood	blood
16	chr9:108435000-108435600	Active TSS	Hela-S3	cervix
17	chr9:108435000-108436000	ZNF genes & repeats	GM12878-XiMat	blood
18	chr9:108435000-108436800	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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