Variant report

Variant	rs10114894
Chromosome Location	chr9:94307501-94307502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10115906	1.00[AMR][1000 genomes]
rs10115915	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116797	1.00[AMR][1000 genomes]
rs10119806	1.00[AMR][1000 genomes]
rs10124762	1.00[AMR][1000 genomes]
rs10125283	1.00[AMR][1000 genomes]
rs12341037	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12341701	1.00[AMR][1000 genomes]
rs12341792	1.00[AMR][1000 genomes]
rs12344821	1.00[AMR][1000 genomes]
rs12344853	1.00[AMR][1000 genomes]
rs12344949	1.00[AMR][1000 genomes]
rs12346318	1.00[AMR][1000 genomes]
rs12346347	1.00[AMR][1000 genomes]
rs12347339	1.00[AMR][1000 genomes]
rs12350605	1.00[AMR][1000 genomes]
rs28407073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533177	1.00[AMR][1000 genomes]
rs28542446	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28552785	1.00[AMR][1000 genomes]
rs28634883	1.00[AMR][1000 genomes]
rs28690250	1.00[AMR][1000 genomes]
rs28716874	1.00[AMR][1000 genomes]
rs28833537	1.00[AMR][1000 genomes]
rs28846802	1.00[AMR][1000 genomes]
rs57082959	1.00[AMR][1000 genomes]
rs59980836	1.00[AMR][1000 genomes]
rs6479362	1.00[AMR][1000 genomes]
rs7024655	1.00[AMR][1000 genomes]
rs7048436	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332537	chr9:94298446-94327291	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94299600-94308600	Weak transcription	NH-A	brain
2	chr9:94299600-94308800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:94304400-94308600	Weak transcription	Osteobl	bone
4	chr9:94304400-94309000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:94306000-94309000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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