Variant report

Variant	rs10119806
Chromosome Location	chr9:94321178-94321179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10114894	1.00[AMR][1000 genomes]
rs10115906	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10115915	1.00[AMR][1000 genomes]
rs10116797	1.00[AMR][1000 genomes]
rs10124762	1.00[AMR][1000 genomes]
rs10125283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12341037	1.00[AMR][1000 genomes]
rs12341701	1.00[AMR][1000 genomes]
rs12341792	1.00[AMR][1000 genomes]
rs12344821	1.00[AMR][1000 genomes]
rs12344853	1.00[AMR][1000 genomes]
rs12344949	1.00[AMR][1000 genomes]
rs12346318	1.00[AMR][1000 genomes]
rs12346347	1.00[AMR][1000 genomes]
rs12347339	1.00[AMR][1000 genomes]
rs12350605	1.00[AMR][1000 genomes]
rs28407073	1.00[AMR][1000 genomes]
rs28533177	1.00[AMR][1000 genomes]
rs28542446	1.00[AMR][1000 genomes]
rs28552785	1.00[AMR][1000 genomes]
rs28634883	1.00[AMR][1000 genomes]
rs28690250	1.00[AMR][1000 genomes]
rs28716874	1.00[AMR][1000 genomes]
rs28833537	1.00[AMR][1000 genomes]
rs28846802	1.00[AMR][1000 genomes]
rs57082959	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59980836	1.00[AMR][1000 genomes]
rs6479362	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7024655	1.00[AMR][1000 genomes]
rs7048436	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332537	chr9:94298446-94327291	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94320400-94333800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:94320600-94321600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:94320600-94323000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:94320600-94324200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:94320800-94321200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:94320800-94321400	Enhancers	NHDF-Ad	bronchial
7	chr9:94320800-94321600	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:94320800-94321800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:94320800-94322600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:94321000-94322000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:94321000-94323200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:94321000-94324600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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