Variant report

Variant	rs10116797
Chromosome Location	chr9:94194148-94194149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94185224..94187549-chr9:94194059..94196684,4	MCF-7	breast:
2	chr9:94187794..94191937-chr9:94194042..94196809,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction
ENSG00000233081	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10114894	1.00[AMR][1000 genomes]
rs10115906	1.00[AMR][1000 genomes]
rs10115915	1.00[AMR][1000 genomes]
rs10119806	1.00[AMR][1000 genomes]
rs10124762	1.00[AMR][1000 genomes]
rs10125283	1.00[AMR][1000 genomes]
rs12341037	1.00[AMR][1000 genomes]
rs12341701	1.00[AMR][1000 genomes]
rs12341792	1.00[AMR][1000 genomes]
rs12344821	1.00[AMR][1000 genomes]
rs12344853	1.00[AMR][1000 genomes]
rs12344949	1.00[AMR][1000 genomes]
rs12346318	1.00[AMR][1000 genomes]
rs12346347	1.00[AMR][1000 genomes]
rs12347339	1.00[AMR][1000 genomes]
rs12350605	1.00[AMR][1000 genomes]
rs28407073	1.00[AMR][1000 genomes]
rs28533177	1.00[AMR][1000 genomes]
rs28542446	1.00[AMR][1000 genomes]
rs28552785	1.00[AMR][1000 genomes]
rs28634883	1.00[AMR][1000 genomes]
rs28690250	1.00[AMR][1000 genomes]
rs28716874	1.00[AMR][1000 genomes]
rs28833537	1.00[AMR][1000 genomes]
rs28846802	1.00[AMR][1000 genomes]
rs57082959	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59980836	1.00[AMR][1000 genomes]
rs6479362	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7024655	1.00[AMR][1000 genomes]
rs7048436	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv466435	chr9:94165889-94225537	Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv614857	chr9:94165889-94225537	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94187400-94194400	Weak transcription	Gastric	stomach
2	chr9:94187600-94195600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:94188400-94194600	Weak transcription	A549	lung
4	chr9:94190400-94195200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:94190400-94195600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:94190400-94195600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:94190400-94195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:94190800-94195200	Weak transcription	HUVEC	blood vessel
9	chr9:94190800-94195400	Weak transcription	Stomach Mucosa	stomach
10	chr9:94190800-94195400	Weak transcription	NH-A	brain
11	chr9:94190800-94195800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:94191200-94195200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:94191800-94194800	Weak transcription	Osteobl	bone
14	chr9:94192000-94195400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:94192000-94195400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:94192200-94195400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr9:94193200-94198000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:94193400-94194800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr9:94193600-94196600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:94193800-94194600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:94193800-94196600	Enhancers	NHDF-Ad	bronchial
22	chr9:94194000-94194200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:94194000-94195600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:94194000-94195800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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