Variant report
| Variant | rs12341037 |
|---|---|
| Chromosome Location | chr9:94313767-94313768 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10114894 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10115906 | 1.00[AMR][1000 genomes] |
| rs10115915 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10116797 | 1.00[AMR][1000 genomes] |
| rs10119806 | 1.00[AMR][1000 genomes] |
| rs10124762 | 1.00[AMR][1000 genomes] |
| rs10125283 | 1.00[AMR][1000 genomes] |
| rs12341701 | 1.00[AMR][1000 genomes] |
| rs12341792 | 1.00[AMR][1000 genomes] |
| rs12344821 | 1.00[AMR][1000 genomes] |
| rs12344853 | 1.00[AMR][1000 genomes] |
| rs12344949 | 1.00[AMR][1000 genomes] |
| rs12346318 | 1.00[AMR][1000 genomes] |
| rs12346347 | 1.00[AMR][1000 genomes] |
| rs12347339 | 1.00[AMR][1000 genomes] |
| rs12350605 | 1.00[AMR][1000 genomes] |
| rs28407073 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28533177 | 1.00[AMR][1000 genomes] |
| rs28542446 | 1.00[AMR][1000 genomes] |
| rs28552785 | 1.00[AMR][1000 genomes] |
| rs28634883 | 1.00[AMR][1000 genomes] |
| rs28690250 | 1.00[AMR][1000 genomes] |
| rs28716874 | 1.00[AMR][1000 genomes] |
| rs28833537 | 1.00[AMR][1000 genomes] |
| rs28846802 | 1.00[AMR][1000 genomes] |
| rs57082959 | 1.00[AMR][1000 genomes] |
| rs59980836 | 1.00[AMR][1000 genomes] |
| rs6479362 | 1.00[AMR][1000 genomes] |
| rs7024655 | 1.00[AMR][1000 genomes] |
| rs7048436 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3332537 | chr9:94298446-94327291 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:94309600-94315600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
