Variant report

Variant	rs10118868
Chromosome Location	chr9:73109900-73109901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:73033648..73035671-chr9:73107577..73110365,3	MCF-7	breast:
2	chr9:73028345..73030685-chr9:73109047..73111392,2	K562	blood:
3	chr9:73106041..73107719-chr9:73109475..73112374,2	K562	blood:

Variant related genes	Relation type
ENSG00000119138	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10120846	1.00[AFR][1000 genomes]
rs11142472	1.00[AFR][1000 genomes]
rs12344287	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73105200-73110400	Weak transcription	K562	blood
2	chr9:73105800-73110600	Enhancers	Left Ventricle	heart
3	chr9:73105800-73110600	Enhancers	Psoas Muscle	Psoas
4	chr9:73106000-73110000	Enhancers	Adipose Nuclei	Adipose
5	chr9:73106000-73110800	Enhancers	Right Ventricle	heart
6	chr9:73107000-73110800	Enhancers	Right Atrium	heart
7	chr9:73107200-73110000	Enhancers	Primary B cells from peripheral blood	blood
8	chr9:73107200-73110600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:73107400-73110000	Enhancers	Fetal Muscle Leg	muscle
10	chr9:73107600-73110400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:73107600-73111400	Weak transcription	Pancreas	Pancrea
12	chr9:73108000-73116600	Weak transcription	Aorta	Aorta
13	chr9:73108400-73110200	Weak transcription	Brain Substantia Nigra	brain
14	chr9:73108400-73110600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:73108400-73111000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr9:73108400-73112600	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:73108400-73116400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:73108800-73110000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:73108800-73111600	Enhancers	Spleen	Spleen
20	chr9:73109200-73110000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:73109200-73110400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:73109200-73111800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr9:73109400-73110000	Active TSS	Stomach Smooth Muscle	stomach
24	chr9:73109400-73110600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:73109400-73110600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:73109800-73110200	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr9:73109800-73110400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr9:73109800-73110400	Enhancers	Brain Hippocampus Middle	brain
29	chr9:73109800-73112600	Weak transcription	Lung	lung

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