Variant report

Variant	rs11142472
Chromosome Location	chr9:73105821-73105822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73034085..73036950-chr9:73105617..73107628,2	K562	blood:
2	chr9:73104551..73109408-chr9:73114371..73117947,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10118868	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10120846	1.00[AFR][1000 genomes]
rs12344287	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73088600-73107200	Weak transcription	Gastric	stomach
2	chr9:73099400-73107800	Weak transcription	Small Intestine	intestine
3	chr9:73100400-73107400	Weak transcription	Stomach Mucosa	stomach
4	chr9:73100600-73106400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:73100600-73107200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:73100800-73106400	Weak transcription	Brain Angular Gyrus	brain
7	chr9:73100800-73106400	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:73100800-73107000	Weak transcription	Lung	lung
9	chr9:73101400-73107200	Weak transcription	Pancreas	Pancrea
10	chr9:73103800-73107200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:73104000-73106800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:73104000-73106800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:73104000-73107600	Weak transcription	Osteobl	bone
14	chr9:73104200-73106000	Weak transcription	Adipose Nuclei	Adipose
15	chr9:73104200-73106000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:73104200-73106200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:73104200-73107200	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:73104200-73107400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:73104200-73107400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:73104200-73107600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:73104400-73106000	Weak transcription	Right Ventricle	heart
22	chr9:73104400-73106400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:73104400-73106400	Weak transcription	Ovary	ovary
24	chr9:73104400-73107000	Weak transcription	Aorta	Aorta
25	chr9:73104400-73107400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:73105000-73107200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:73105200-73110400	Weak transcription	K562	blood
28	chr9:73105600-73106000	Enhancers	Brain Substantia Nigra	brain
29	chr9:73105600-73108200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr9:73105800-73106000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:73105800-73106400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:73105800-73106400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:73105800-73106400	Enhancers	Right Atrium	heart
34	chr9:73105800-73108400	Enhancers	Brain Anterior Caudate	brain
35	chr9:73105800-73109000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:73105800-73110600	Enhancers	Left Ventricle	heart
37	chr9:73105800-73110600	Enhancers	Psoas Muscle	Psoas

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