Variant report

Variant	rs10120846
Chromosome Location	chr9:73107545-73107546
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:73098006..73100927-chr9:73106151..73108210,2	MCF-7	breast:
2	chr9:73106041..73107719-chr9:73109475..73112374,2	K562	blood:
3	chr9:73102768..73104960-chr9:73107078..73109058,2	K562	blood:
4	chr9:73034085..73036950-chr9:73105617..73107628,2	K562	blood:
5	chr9:73104551..73109408-chr9:73114371..73117947,4	K562	blood:
6	chr9:73094687..73096290-chr9:73106130..73108014,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10118868	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11142472	1.00[AFR][1000 genomes]
rs12344287	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73099400-73107800	Weak transcription	Small Intestine	intestine
2	chr9:73104000-73107600	Weak transcription	Osteobl	bone
3	chr9:73104200-73107600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:73105200-73110400	Weak transcription	K562	blood
5	chr9:73105600-73108200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr9:73105800-73108400	Enhancers	Brain Anterior Caudate	brain
7	chr9:73105800-73109000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:73105800-73110600	Enhancers	Left Ventricle	heart
9	chr9:73105800-73110600	Enhancers	Psoas Muscle	Psoas
10	chr9:73106000-73109200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr9:73106000-73110000	Enhancers	Adipose Nuclei	Adipose
12	chr9:73106000-73110800	Enhancers	Right Ventricle	heart
13	chr9:73106200-73107800	Enhancers	Stomach Smooth Muscle	stomach
14	chr9:73106400-73107600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:73106400-73108000	Enhancers	Ovary	ovary
16	chr9:73106400-73108400	Enhancers	Brain Angular Gyrus	brain
17	chr9:73106400-73108400	Enhancers	Brain Hippocampus Middle	brain
18	chr9:73106800-73107800	Enhancers	Duodenum Mucosa	Duodenum
19	chr9:73107000-73108000	Enhancers	Aorta	Aorta
20	chr9:73107000-73108800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr9:73107000-73109200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:73107000-73109800	Enhancers	Lung	lung
23	chr9:73107000-73110800	Enhancers	Right Atrium	heart
24	chr9:73107200-73107600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr9:73107200-73107600	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr9:73107200-73107600	Enhancers	Pancreas	Pancrea
27	chr9:73107200-73107600	Enhancers	Spleen	Spleen
28	chr9:73107200-73108200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:73107200-73108400	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr9:73107200-73108400	Enhancers	Colon Smooth Muscle	Colon
31	chr9:73107200-73108600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr9:73107200-73108600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:73107200-73108600	Enhancers	Gastric	stomach
34	chr9:73107200-73109000	Enhancers	Primary T cells fromperipheralblood	blood
35	chr9:73107200-73109800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
36	chr9:73107200-73110000	Enhancers	Primary B cells from peripheral blood	blood
37	chr9:73107200-73110600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:73107400-73108000	Enhancers	Brain Cingulate Gyrus	brain
39	chr9:73107400-73108200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:73107400-73108200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:73107400-73108200	Enhancers	Stomach Mucosa	stomach
42	chr9:73107400-73108400	Enhancers	Brain Substantia Nigra	brain
43	chr9:73107400-73108400	Enhancers	Rectal Smooth Muscle	rectum
44	chr9:73107400-73108600	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr9:73107400-73108800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:73107400-73109000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:73107400-73109400	Enhancers	Primary hematopoietic stem cells	blood
48	chr9:73107400-73110000	Enhancers	Fetal Muscle Leg	muscle

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