Variant report

Variant	rs12344287
Chromosome Location	chr9:73111102-73111103
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10118868	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10120846	1.00[AFR][1000 genomes]
rs11142472	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73107600-73111400	Weak transcription	Pancreas	Pancrea
2	chr9:73108000-73116600	Weak transcription	Aorta	Aorta
3	chr9:73108400-73112600	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:73108400-73116400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:73108800-73111600	Enhancers	Spleen	Spleen
6	chr9:73109200-73111800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:73109800-73112600	Weak transcription	Lung	lung
8	chr9:73110400-73111400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr9:73110600-73111400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:73110600-73119600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:73110600-73120600	Weak transcription	Psoas Muscle	Psoas
12	chr9:73110800-73113600	Weak transcription	Right Atrium	heart
13	chr9:73110800-73115000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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