Variant report

Variant	rs10119943
Chromosome Location	chr9:117698939-117698940
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12002641	1.00[EUR][1000 genomes]
rs12004499	1.00[EUR][1000 genomes]
rs1891836	1.00[EUR][1000 genomes]
rs3181375	1.00[EUR][1000 genomes]
rs7041886	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv6680	chr9:117690388-117699304	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117694200-117699600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:117694400-117700200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:117695000-117700200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr9:117695200-117700800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr9:117695600-117701000	Weak transcription	Thymus	Thymus
6	chr9:117697600-117699800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:117698400-117699000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:117698600-117700800	Weak transcription	Fetal Lung	lung
9	chr9:117698600-117702000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:117698600-117703200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr9:117698800-117699800	Weak transcription	Adipose Nuclei	Adipose
12	chr9:117698800-117701800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr9:117698800-117702600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links